Sequence Similarity Clusters for the Entities in PDB 1KK8

Entity #1 | Chains: A
Myosin Heavy Chain, Striated muscle protein, length: 837 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 14 4755
95 % 1 14 5463 Flexibility: High
Max RMSD: 28.6, Avg RMSD: 13.3
PDBFlex
90 % 1 17 4607
70 % 1 21 3532
50 % 4 52 538
40 % 39 100 401
30 % 58 135 280
Entity #2 | Chains: B
Myosin Regulatory Light Chain, Striated adductor muscle protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 13316
95 % 1 6 12970 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 1 6 12771
70 % 5 24 2625
50 % 5 28 2318
40 % 5 28 2344
30 % 5 28 2347
Entity #3 | Chains: C
Myosin Essential Light Chain,Striated adductor muscle protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 17 3507
95 % 5 24 2502 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 5 24 2621
70 % 5 24 2653
50 % 5 28 2338
40 % 139 360 67
30 % 139 361 68

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures