Sequence Similarity Clusters for the Entities in PDB 1KGY

Entity #1 | Chains: A,B,C,D
EPHRIN TYPE-B RECEPTOR 2 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13233
95 % 4 4 10583 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.9
PDBFlex
90 % 4 4 10438
70 % 4 4 9908
50 % 15 18 1037
40 % 22 25 894
30 % 22 25 882
Entity #2 | Chains: E,F,G,H
EPHRIN-B2 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23013
95 % 5 8 5173 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 5 8 5194
70 % 5 8 5104
50 % 5 9 4252
40 % 5 9 4062
30 % 10 16 1680

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.