Sequence Similarity Clusters for the Entities in PDB 1KGY

Entity #1 | Chains: A,B,C,D
EPHRIN TYPE-B RECEPTOR 2 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13528
95 % 4 4 10805 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.9
PDBFlex
90 % 4 4 10656
70 % 4 4 10117
50 % 15 18 1062
40 % 22 25 911
30 % 22 25 899
Entity #2 | Chains: E,F,G,H
EPHRIN-B2 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23560
95 % 5 8 5305 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 5 8 5325
70 % 5 8 5225
50 % 5 9 4336
40 % 5 9 4141
30 % 10 16 1727

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures