Sequence Similarity Clusters for the Entities in PDB 1KBG

Entity #1 | Chains: H
PROTEIN (MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I ANTIGEN H-2KB) protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 50 563
95 % 34 67 540 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 34 67 567
70 % 497 842 6
50 % 502 856 7
40 % 548 917 8
30 % 551 942 14
Entity #2 | Chains: L
PROTEIN (BETA-2-MICROGLOBULIN) protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 144 114
95 % 112 274 70 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 112 274 78
70 % 627 1123 4
50 % 642 1149 3
40 % 642 1149 4
30 % 642 1149 10
Entity #3 | Chains: P
PROTEIN (SYNTHETIC GLYCOPEPTIDE RGY8-6H-GAL2) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures