Sequence Similarity Clusters for the Entities in PDB 1KB6

Entity #1 | Chains: C
5'-D(*CP*AP*CP*GP*GP*GP*TP*GP*AP*AP*TP*GP*AP*GP*GP*AP*CP*A)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(*TP*GP*TP*CP*CP*TP*CP*AP*TP*TP*CP*AP*CP*CP*CP*GP*TP*G)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
Vitamin D3 Receptor protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 16364
95 % 1 4 12772 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 1 4 12597
70 % 1 4 11986
50 % 1 4 10983
40 % 1 4 10342
30 % 1 4 9554

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1KB6 3 A, B Vitamin D3 Receptor DNA-binding Domain (Residues 16-125) 9606
2 1KB2 3 A, B Vitamin D3 Receptor DNA-binding Domain (Residues 16-125) 9606
3 1KB4 3 A, B Vitamin D3 Receptor DNA-binding Domain (Residues 16-125) 9606
4 1YNW 3 A Vitamin D3 Receptor DNA-binding Domain (Residues 16-125) 9606