Sequence Similarity Clusters for the Entities in PDB 1K83

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 132 258
95 % 16 132 351 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 1.6
PDBFlex
90 % 16 132 363
70 % 17 151 346
50 % 17 153 403
40 % 17 153 425
30 % 17 153 438
Entity #10 | Chains: L
DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 173 189
95 % 17 173 248 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.0
PDBFlex
90 % 17 173 254
70 % 17 173 296
50 % 18 192 310
40 % 18 192 325
30 % 18 192 340
Entity #11 | Chains: M
ALPHA AMANITIN protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 133 250
95 % 16 134 335 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.2
PDBFlex
90 % 16 134 347
70 % 17 155 336
50 % 17 170 357
40 % 17 178 353
30 % 17 193 334
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 129 272
95 % 15 129 365 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 15 129 378
70 % 15 129 416
50 % 15 129 467
40 % 15 131 487
30 % 15 131 514
Entity #4 | Chains: E
DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 178 183
95 % 19 178 241 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.7
PDBFlex
90 % 19 178 249
70 % 20 197 258
50 % 20 199 289
40 % 20 214 255
30 % 20 214 273
Entity #5 | Chains: F
DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 172 191
95 % 17 172 250 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 17 172 257
70 % 17 172 301
50 % 18 193 306
40 % 18 193 320
30 % 18 193 335
Entity #6 | Chains: H
DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 177 185
95 % 18 178 242 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.0
PDBFlex
90 % 18 178 247
70 % 18 178 286
50 % 19 197 298
40 % 19 197 311
30 % 19 213 285
Entity #7 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 133 255
95 % 16 133 343 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.0
PDBFlex
90 % 16 133 359
70 % 17 152 344
50 % 17 154 396
40 % 17 154 419
30 % 17 169 393
Entity #8 | Chains: J
DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 177 184
95 % 18 177 245 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 18 177 251
70 % 19 213 235
50 % 19 213 247
40 % 19 213 261
30 % 19 213 278
Entity #9 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 134 245
95 % 16 134 334 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 16 134 346
70 % 16 134 391
50 % 17 153 405
40 % 17 155 418
30 % 17 155 429

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures