Sequence Similarity Clusters for the Entities in PDB 1K34

Entity #1 | Chains: A
Transmembrane glycoprotein GP41 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 75326
95 % 5 13 4460 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 1.5
PDBFlex
90 % 5 13 4439
70 % 5 17 2123
50 % 5 15 3487
40 % 5 15 3481
30 % 5 15 3402

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures