Sequence Similarity Clusters for the Entities in PDB 1JY7

Entity #1 | Chains: A,C,P,R,U,W
Hemoglobin alpha chain protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 189 218 43
95 % 225 255 39 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 226 256 44
70 % 296 339 22
50 % 650 733 7
40 % 650 733 7
30 % 698 781 10
Entity #2 | Chains: B,D,Q,S,V,X
Hemoglobin beta chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 144 165 80
95 % 231 256 36 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 236 261 37
70 % 310 349 18
50 % 651 733 7
40 % 651 733 7
30 % 699 781 10

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures