1JTO

Degenerate interfaces in antigen-antibody complexes


Sequence Similarity Clusters for the Entities in PDB 1JTO

Entity #1 | Chains: A,B
Vh Single-Domain Antibody protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 29221
95 % 2 3 15849
90 % 4 6 10271
70 % 341 627 7
50 % 468 910 5
40 % 469 927 6
30 % 681 1364 5
Entity #2 | Chains: L,M
Lysozyme protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 719 787 3
95 % 774 843 5
90 % 788 860 6
70 % 794 867 11
50 % 1015 1095 9
40 % 1046 1130 10
30 % 1047 1132 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures