1JQS

Fitting of L11 protein and elongation factor G (domain G' and V) in the cryo-em map of E. coli 70S ribosome bound with EF-G and GMPPCP, a nonhydrolysable GTP analog


Sequence Similarity Clusters for the Entities in PDB 1JQS

Entity #1 | Chains: A
50S Ribosomal protein L11 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 19 3157
95 % 17 21 3463
90 % 17 21 3514
70 % 20 24 2997
50 % 261 265 156
40 % 261 265 169
30 % 269 273 171
Entity #2 | Chains: B
Elongation Factor G protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 77408
95 % 1 1 48479
90 % 1 1 45915
70 % 1 1 40457
50 % 1 1 34987
40 % 1 1 31674
30 % 1 1 27983
Entity #3 | Chains: C
Elongation Factor G protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 77409
95 % 1 1 48480
90 % 1 1 45916
70 % 1 1 40458
50 % 1 1 34988
40 % 1 1 31675
30 % 1 1 27984

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures