Sequence Similarity Clusters for the Entities in PDB 1JPX

Entity #1 | Chains: A,D,G
gp41 envelope protein protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32841
95 % 1 1 29003 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 2 22403
70 % 2 2 20481
50 % 2 2 18163
40 % 2 2 16734
30 % 2 2 15067

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures