1JPF

Crystal Structure Of The LCMV Peptidic Epitope Gp276 In Complex With The Murine Class I Mhc Molecule H-2Db


Sequence Similarity Clusters for the Entities in PDB 1JPF

Entity #1 | Chains: A
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 66 247
95 % 20 70 305
90 % 20 72 319
70 % 479 861 6
50 % 484 875 8
40 % 523 936 9
30 % 525 961 13
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 144 113
95 % 96 276 70
90 % 96 276 79
70 % 596 1143 4
50 % 607 1169 4
40 % 607 1169 5
30 % 607 1169 10
Entity #3 | Chains: C
LCMV peptidic epitope gp276 protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1LK2 2 B Beta-2-microglobulin SEQUENCE DATABASE RESIDUES 21-119, NUMBERED 1-99 10090
2 1KPU 2 B beta-2-microglobulin sequence database residues 21-119, numbered 1-99 10090
3 1G7P 2 B BETA-2 MICROGLOBULIN RESIDUES 21-119 10090
4 3GMO 2 B Beta-2 microglobulin UNP residues 21-119 10090
5 5WEU 2 B Beta-2-microglobulin residues 21-119 10090
6 3G08 2 B Beta-2 microglobulin UNP residues 21-119 10090
7 1G7Q 2 B BETA-2 MICROGLOBULIN RESIDUES 21-119 10090
8 3GMP 2 B Beta-2 microglobulin UNP residues 21-119 10090
9 3GML 2 B Beta-2 microglobulin UNP residues 21-119 10090
10 3GMN 2 B Beta-2 microglobulin UNP residues 21-119 10090
11 3ECB 2 B Beta-2 microglobulin UNP residues 21 to 119 10090
12 6C6F 2 B Beta-2-microglobulin 10090
13 3T1F 2 B Beta-2-microglobulin UNP residues 21-119 10090
14 1KPV 2 B beta-2-microglobulin sequence database residues 21-119, numbered 1-99 10090
15 1FZK 2 B PROTEIN (BETA-2-MICROGLOBULIN) 10090
16 3GMM 2 B Beta-2 microglobulin UNP residues 21-119 10090
17 3GMQ 2 B Beta-2 microglobulin UNP residues 21-119 10090
18 5TW2 2 B Beta-2-microglobulin 10090
19 6C6J 2 B Beta-2-microglobulin 10090
20 1FZO 2 B PROTEIN (BETA-2-MICROGLOBULIN) 10090
21 1LEG 2 B BETA-2-MICROGLOBULIN SEQUENCE DATABASE RESIDUES 21-119, NUMBERED 1-99 10090
22 6GB6 2 B, E Beta-2-microglobulin 10090
23 5FKP 2 B BETA 2 MICROGLOBULIN 10090
24 2FIK 2 B B(2)-microglobulin 10090
25 1FZM 2 B PROTEIN (BETA-2-MICROGLOBULIN) 10090
26 2ZSV 2 B, D Beta-2-microglobulin 10090
27 2AKR 2 B, D Beta-2-microglobulin residues 21-119 10090
28 3GMR 2 B Beta-2 microglobulin UNP residues 21-119 10090
29 4L8D 2 B, D Beta-2-microglobulin UNP residues 21-119 10090
30 5EFI 2 B Beta-2-microglobulin 10090
31 6I8C 1 A Beta-2-microglobulin 10090
32 3ILP 2 B Beta-2 microglobulin UNP residues 21-119 10090
33 3WS6 2 C, D Beta-2-microglobulin 10090
34 3PWU 2 B Beta-2-microglobulin murine beta2m 10090
35 6MJJ 4 B Beta-2-microglobulin 10090
36 5TW5 2 B Beta-2-microglobulin 10090
37 1T0N 2 B, E Beta-2-microglobulin 10090
38 4PV9 2 B, D Beta-2-microglobulin 10090
39 3VJ6 2 B Beta-2-microglobulin 10090
40 1WBX 2 B BETA-2MICROGLOBULIN 10090
41 1FZJ 2 B BETA-2-MICROGLOBULIN 10090
42 1S7Q 2 B Beta-2-microglobulin 10090
43 2CLZ 2 B, P BETA-2 MICROGLOBULIN 10090
44 3P9M 2 B, E Beta-2-microglobulin 10090
45 4HV8 2 B, D Beta-2-microglobulin 10090
46 1U58 2 B beta-2-microglobulin 10090
47 6C69 2 B Beta-2-microglobulin 10090
48 2CLV 2 B, P BETA-2 MICROGLOBULIN 10090
49 6MJ4 4 B Beta-2-microglobulin 10090
50 5T7G 2 B, D Beta-2-microglobulin 10090
51 2Q7Y 2 B, D Beta-2-microglobulin 10090
52 3P9L 2 B, E Beta-2-microglobulin 10090
53 1S7S 2 B Beta-2-microglobulin 10090
54 6CW9 4 B Beta-2-microglobulin 10090
55 4HUU 2 B, E Beta-2-microglobulin 10090
56 6MIV 4 B Beta-2-microglobulin 10090
57 6C6H 2 B Beta-2-microglobulin 10090
58 4PGE 2 B Beta-2-microglobulin UNP residues 21-119 10090
59 1RJY 2 B, E Beta-2-microglobulin 10090
60 1JUF 2 B Beta-2-microglobulin 10090
61 5IVX 2 B Beta-2-microglobulin 10090
62 3CC5 2 B, E Beta-2-microglobulin 10090
63 3QUL 2 B, E, H, K Beta-2-microglobulin UNP Residues 21-119 10090
64 1WBZ 2 B, D BETA-2MICROGLOBULIN 10090
65 6CYW 2 B Beta-2-microglobulin 10090
66 6OMG 4 B Beta-2-microglobulin 10090
67 4HS3 2 B Beta-2-microglobulin UNP residues 21-119 10090
68 1MHC 2 B, E MHC CLASS I ANTIGEN H2-M3 10090
69 5E8O 3 B, E Beta-2-microglobulin 10090
70 5E8P 2 B, E Beta-2-microglobulin 10090
71 6C6C 2 B Beta-2-microglobulin 10090
72 3ILQ 2 D Beta-2 microglobulin UNP residues 21-119 10090
73 6CXE 4 B Beta-2-microglobulin 10090
74 3FON 2 B, D Beta-2-microglobulin IgC 10090
75 3ROO 2 B, D Beta-2-microglobulin unp residues 21-119 10090
76 5VCL 2 B Beta-2-microglobulin UNP residues 21-119 10090
77 1RK1 2 B Beta-2-microglobulin 10090
78 1T0M 2 B, E Beta-2-microglobulin 10090
79 2ZOK 2 B, D, F, H Beta-2-microglobulin 10090
80 2VAA 2 B BETA-2 MICROGLOBULIN 10090
81 4PV8 2 B, D Beta-2-microglobulin 10090
82 3E6H 2 B Putative uncharacterized protein EXTRACELLULAR DOMAIN 10090
83 1NEZ 2 B Beta-2-microglobulin 10090
84 1LEK 2 B Beta-2-microglobulin SEQUENCE DATABASE RESIDUES 21-119, NUMBERED 1-99 10090
85 4HUX 2 B Beta-2-microglobulin 10090
86 3PAB 2 B, E Beta-2-microglobulin 10090
87 5WLG 2 B, G Beta-2-microglobulin 10090
88 4L8B 2 B Beta-2-microglobulin UNP residues 21-119 10090
89 5J6H 2 B Beta-2-microglobulin 10090
90 3QUY 2 B Beta-2 microglobulin UNP residues 21-119 10090
91 3FOM 2 B Beta-2-microglobulin IgC 10090
92 6A97 2 B, D Beta-2-microglobulin 10090
93 3TBV 2 B, D, F, H Beta-2-microglobulin RESIDUES 21-119 10090
94 6CWE 2 B Beta-2-microglobulin 10090
95 6OJP 2 B Beta-2-microglobulin UNP residues 21-119 10090
96 1JPF 2 B BETA-2-MICROGLOBULIN 10090
97 1YN6 2 B Beta-2-microglobulin 10090
98 6C6E 2 B Beta-2-microglobulin 10090
99 6MJI 4 B Beta-2-microglobulin 10090
100 5WLI 2 B, E, H, K Beta-2-microglobulin 10090
101 3RUG 2 B, D Beta-2-microglobulin 10090
102 1INQ 2 B BETA-2 MICROGLOBULIN 10090
103 2VAB 2 B BETA-2 MICROGLOBULIN 10090
104 3QUZ 2 B Beta-2 microglobulin UNP residues 21-119 10090
105 1VAD 2 B BETA-2 MICROGLOBULIN 10090
106 1S7U 2 B, E, H, K Beta-2-microglobulin 10090
107 1YN7 2 B Beta-2-microglobulin 10090
108 1QO3 2 B BETA-2-MICROGLOBULIN 10090
109 6GB5 2 B, D Beta-2-microglobulin 10090
110 4ZUV 2 B, E Beta-2-microglobulin 10090
111 1PQZ 2 B Beta-2-microglobulin Mature Beta-2-Microglobulin 10090
112 1LD9 2 B, E BETA-2 MICROGLOBULIN 10090
113 1KBG 2 L PROTEIN (BETA-2-MICROGLOBULIN) FORMS HETERODIMER WITH CHAIN H, AND THEN A TRIMOLECULAR COMPLEX WITH CHAIN P MHC ASSOCIATED LIGHT CHAIN 10090
114 6CX9 2 B Beta-2-microglobulin 10090
115 3TBW 2 B, D, F, H Beta-2-microglobulin RESIDUES 21-119 10090
116 4MX7 2 B Beta-2-microglobulin b2M ectodomain, UNP residues 21-119 10090
117 3P4O 2 B, E Beta-2-microglobulin 10090
118 1S7T 2 B, E Beta-2-microglobulin 10090
119 1OSZ 2 B BETA-2 MICROGLOBULIN 10090
120 6MJA 4 B Beta-2-microglobulin 10090
121 1VAC 2 B BETA-2 MICROGLOBULIN 10090
122 1S7V 2 B, E Beta-2-microglobulin 10090
123 1JPG 2 B BETA-2-MICROGLOBULIN 10090
124 5KD7 2 B, D, G, J Beta-2-microglobulin 10090
125 6GB7 2 B, D, H Beta-2-microglobulin 10090
126 6GB7 3 F Beta-2-microglobulin 10090
127 4ZUU 2 B Beta-2-microglobulin UNP residues 21-119 10090
128 1KJ3 3 L, M BETA-2 MICROGLOBULIN 10090
129 4PGC 2 B, E Beta-2-microglobulin UNP residues 21-119 10090
130 1HOC 2 B BETA 2-MICROGLOBULIN 10090
131 5JWD 2 B Beta-2-microglobulin 10090
132 6MJ6 4 B Beta-2-microglobulin 10090
133 6H6D 2 B, E Beta-2-microglobulin 10090
134 1S7W 2 B, E, H, K Beta-2-microglobulin 10090
135 2MHA 2 B, D BETA 2-MICROGLOBULIN 10090
136 5JWE 2 B, D, F, H Beta-2-microglobulin 10090
137 6H6H 2 B, E Beta-2-microglobulin 10090
138 1S7X 2 B, E, H, K Beta-2-microglobulin 10090
139 1K8D 2 B BETA-2-MICROGLOBULIN 10090
140 1Z5L 2 B, D Beta-2-microglobulin extracellular domain 10090
141 3P4M 2 B, E Beta-2-microglobulin 10090
142 3WS3 2 B, D Beta-2-microglobulin 10090
143 6C5M 2 B Beta-2-microglobulin 10090
144 1NAN 2 I, P Beta-2-microglobulin 10090
145 4PG9 2 B Beta-2-microglobulin UNP residues 21-119 10090
146 3FOL 2 B Beta-2-microglobulin IgC 10090
147 3AU1 2 B Beta-2-microglobulin 10090
148 6BMH 2 B, D, F, H Beta-2-microglobulin 10090
149 5E8N 2 B, E, H, K Beta-2-microglobulin 10090
150 3MA7 2 B, D Beta-2 microglobulin UNP RESIDUES 21-119 10090
151 3CH1 2 B, E, H, K Beta-2-microglobulin 10090
152 6BNL 2 B, F Beta-2-microglobulin 10090
153 6CXF 2 B Beta-2-microglobulin 10090
154 1WBY 2 B BETA-2MICROGLOBULIN 10090
155 6CX5 2 B Beta-2-microglobulin 10090
156 6OOR 2 B Beta-2-microglobulin UNP residues 21-119 10090
157 6BMK 2 B, D Beta-2-microglobulin 10090
158 3E6F 2 B BETA-2 MICROGLOBULIN UNP residues 21 to 119 10090
159 6C6A 2 B Beta-2-microglobulin 10090
160 6JQ2 3 B Beta-2-microglobulin 10090
161 3TBT 2 B, E, H, K Beta-2-microglobulin RESIDUES 21-119 10090
162 4HUV 2 B, E Beta-2-microglobulin 10090
163 5MZM 2 B, E Beta-2-microglobulin 10090
164 1ZT1 2 B Beta-2-microglobulin 10090
165 3QI9 2 B Beta-2-microglobulin 10090
166 5WET 2 B Beta-2-microglobulin residues 21-119 10090
167 1RK0 2 B Beta-2-microglobulin 10090
168 1CD1 2 B, D CD1 ALPHA1, ALPHA2, ALPHA3, BETA2-MICROGLOBULIN 10090
169 1FO0 2 L PROTEIN (BETA-2 MICROGLOBULIN) 10090
170 6CXA 2 B Beta-2-microglobulin 10090
171 2FO4 2 B Beta-2-microglobulin 10090
172 6JQ3 3 B Beta-2-microglobulin 10090
173 6CX7 4 B Beta-2-microglobulin 10090
174 4Y16 2 B Beta-2-microglobulin UNP residues 21-119 10090
175 3CPL 2 B, D Beta-2-microglobulin 10090
176 5WES 2 B Beta-2-microglobulin residues 21-119 10090
177 3QUK 2 B, E Beta-2-microglobulin UNP Residues 21-119 10090
178 4ZUW 2 B Beta-2-microglobulin UNP resides 21-119 10090
179 4ZUS 2 B Beta-2-microglobulin UNP residues 21-119 10090
180 3TBS 2 B, E Beta-2-microglobulin UNP RESIDUES 21-119 10090
181 6MIY 4 B, F Beta-2-microglobulin 10090
182 4L8C 2 B, D, F, H Beta-2-microglobulin UNP residues 21-119 10090
183 2GAZ 2 B beta-2-microglobulin 10090
184 3O8X 2 B Beta-2-microglobulin 10090
185 4NSK 2 B Beta-2-microglobulin 10090
186 4IRS 2 B Beta-2-microglobulin 10090
187 3TA3 2 B Beta-2-microglobulin Residues 21-119 10090
188 4ZUT 2 B Beta-2-microglobulin UNP residues 21-119 10090
189 4MQ7 2 B Beta-2-microglobulin Beta-2-microglobulin 10090
190 3O9W 2 B Beta-2-microglobulin residues 21-119 10090
191 4PGD 2 B Beta-2-microglobulin UNP residues 21-119 10090
192 3FTG 2 B Beta-2-microglobulin 10090
193 1RJZ 2 B, E Beta-2-microglobulin 10090
194 3ARB 2 B Beta-2-microglobulin 10090
195 4MNG 1 B, D Beta-2-microglobulin Beta-2-microglobulin 10090
196 4APQ 2 B BETA-2-MICROGLOBULIN 10090
197 3P4N 2 B, E Beta-2-microglobulin 10090
198 5SWZ 2 B, G, L, Q Beta-2-microglobulin 10090
199 1KJ2 3 L, M Beta-2 microglobulin 10090
200 6MSS 4 D Beta-2-microglobulin 10090
201 4IRJ 2 B Beta-2-microglobulin 10090
202 1BQH 2 B, E PROTEIN (BETA-2-MICROGLOBULIN ) BETA CHAIN 10090
203 1ZHB 2 B, E, H, K Beta-2-microglobulin 10090
204 3L3H 2 B Beta-2-microglobulin 10090
205 3C8K 2 B beta-2 microglobulin UNP residues 21-119 10090
206 4PG2 2 C Beta-2-microglobulin 10090
207 2ZSW 2 B, D, F, H Beta-2-microglobulin 10090
208 5KD4 2 B, D Beta-2-microglobulin 10090
209 3CCH 2 B, E, H, K Beta-2-microglobulin 10090
210 6CW6 2 B Beta-2-microglobulin 10090
211 2VE6 2 B, E, H, K BETA-2-MICROGLOBULIN RESIDUES 22-119 10090
212 3RGV 4 D Beta-2-microglobulin Residues 21-119 10090
213 3BUY 2 B Beta-2-microglobulin 10090
214 3DMM 2 B Beta-2 microglobulin Residues 21-119 10090
215 4ZAK 2 B Beta-2-microglobulin 10090
216 3ROL 2 B, D Beta-2-microglobulin unp residues 21-119 10090
217 1ZHN 2 B beta-2-microglobulin 10090
218 4HUW 2 B, D, F, H Beta-2-microglobulin 10090
219 4Y4K 2 B Beta-2-microglobulin UNP residues 21-119 10090
220 6G9R 2 B, D, F, H Beta-2-microglobulin UNP residues 21-119 10090
221 1FFP 2 B, E BETA-2 MICROGLOBULIN BETA CHAIN BETA-2 MICROGLOBULIN 10090
222 3ARE 2 B Beta-2-microglobulin 10090
223 3QUX 2 B Beta-2 microglobulin UNP residues 21-119 10090
224 1NAM 5 L Beta-2-microglobulin 10090
225 6CWB 2 B Beta-2-microglobulin 10090
226 2FWO 2 B Beta-2-microglobulin 10090
227 1FFO 2 B, E BETA-2 MICROGLOBULIN BETA CHAIN BETA-2 MICROGLOBULIN 10090
228 1MWA 4 L, M MICROGLOBULIN MHC LIGHT CHAIN 10090
229 5TIL 2 B, E Beta-2-microglobulin 10090
230 3HE7 2 B Beta-2-microglobulin 10090
231 3TVM 2 B, F beta-2-microglobulin 10090
232 1FFN 2 B, E BETA-2 MICROGLOBULIN, BETA CHAIN BETA-2 MICROGLOBULIN 10090
233 3RTQ 2 B Beta-2-microglobulin 10090
234 1FG2 2 B, E, H, K BETA-2 MICROGLOBULIN 10090
235 3SCM 2 B Beta-2-microglobulin extracellular domain, UNP residues 21-119 10090
236 5VCJ 2 B Beta-2-microglobulin UNP residues 21-119 10090
237 4EI5 2 B, F Beta-2-microglobulin UNP residues 21-119 10090
238 3CVH 2 B, N Beta-2-microglobulin 10090
239 3RZC 2 B Beta-2-microglobulin 1-99 10090
240 3UBX 2 B, E Beta-2-microglobulin UNP residues 21-119 10090
241 2OL3 4 L Beta-2-microglobulin 10090
242 3ARF 2 B Beta-2-microglobulin 10090
243 5SWS 2 B Beta-2-microglobulin 10090
244 6MJQ 4 B, F Beta-2-microglobulin 10090
245 3ARD 2 B Beta-2-microglobulin 10090
246 2ZOL 2 B, D Beta-2-microglobulin 10090
247 3TBY 2 B, E, H, K Beta-2-microglobulin RESIDUES 21-119 10090
248 2CKB 5 L, M BETA-2 MICROGLOBULIN 10090
249 6BNK 2 B, F Beta-2-microglobulin 10090
250 4Y2D 2 B, F Beta-2-microglobulin UNP residues 21-119 10090
251 3HE6 2 B Beta-2-microglobulin 10090
252 1N59 2 B, D Beta-2-microglobulin 10090
253 4IHO 2 B, E Beta-2-microglobulin 10090
254 3TO4 2 B Beta-2 microglobulin UNP residues 21-119 10090
255 1LDP 2 L MHC CLASS I H-2LD ASPARAGINE LINKED N-ACETYL-GLUCOSAMINE CARBOHYDRATES AT CHAIN H, N86 AND N176 CHAIN H IS THE HEAVY CHAIN, PEPTIDE BINDING DOMAIN, CHAIN L IS THE LIGHT CHAIN OR BETA-2-MICROGLOBULIN 10090
256 1ZT7 2 B, D Beta-2-microglobulin 10090
257 4PGB 2 B, E Beta-2-microglobulin UNP residues 21-119 10090
258 1N5A 2 B, E, H, K Beta-2-microglobulin 10090
259 3ARG 2 B Beta-2-microglobulin 10090
260 1S7R 2 B, E Beta-2-microglobulin 10090
261 4Y4F 2 B, F Beta-2-microglobulin UNP residues 21-119 10090
262 1DDH 2 B BETA-2 MICROGLOBULIN EXTRACELLULAR DOMAIN 10090
263 1BZ9 2 B PROTEIN (CLASS I HISTOCOMPATIBILITY ANTIGEN) 10090
264 1N3N 2 B, D, F, H BETA-2-MICROGLOBULIN 10090
265 3TN0 2 B Beta-2 microglobulin UNP residues 21-119 10090
266 3SDA 2 B Beta-2-microglobulin extracellular domain, UNP residues 21-119 10090
267 5J6G 2 B, D Beta-2-microglobulin 10090
268 5TJE 2 B, D Beta-2-microglobulin 10090
269 3SDC 2 B Beta-2-microglobulin extracellular domain, UNP residues 21-119 10090
270 4Y4H 2 B, F Beta-2-microglobulin UNP residues 21-119 10090
271 1P4L 2 B Beta-2-microglobulin 10090
272 4ELM 2 B, D Beta-2 microglobulin 10090
273 3SDD 2 B Beta-2-microglobulin extracellular domain, UNP residues 21-119 10090
274 3PQY 2 B, G, L, Q Beta-2-microglobulin 10090
275 1G6R 4 L, M BETA-2 MICROGLOBULIN NON-COVALENTLY ASSOCIATED WITH ENTITY 3 10090
276 1P1Z 2 B Beta-2-microglobulin 10090