1JPF

Crystal Structure Of The LCMV Peptidic Epitope Gp276 In Complex With The Murine Class I Mhc Molecule H-2Db


Sequence Similarity Clusters for the Entities in PDB 1JPF

Entity #1 | Chains: A
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 66 247
95 % 20 70 305
90 % 20 72 319
70 % 479 861 6
50 % 484 875 8
40 % 523 936 9
30 % 525 961 13
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 144 113
95 % 96 276 70
90 % 96 276 79
70 % 596 1143 4
50 % 607 1169 4
40 % 607 1169 5
30 % 607 1169 10
Entity #3 | Chains: C
LCMV peptidic epitope gp276 protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5M02 1 A H-2 class I histocompatibility antigen, D-B alpha chain 10090
2 6G9Q 1 A H-2 class I histocompatibility antigen, D-B alpha chain UNP residues 25-300 10090
3 4L8D 1 A, C H-2 class I histocompatibility antigen, D-B alpha chain UNP residues 25-304 10090
4 3WS6 1 A, B H-2 class I histocompatibility antigen, D-B alpha chain EXTRACELLULAR DOMAIN 10090
5 1WBX 1 A H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN EXTRACELLULAR DOMAIN, RESIDUES 25-300 10090
6 4HV8 1 A, C H-2 class I histocompatibility antigen, D-B alpha chain 10090
7 5M01 1 A H-2 class I histocompatibility antigen, D-B alpha chain 10090
8 5M00 1 A H-2 class I histocompatibility antigen, D-B alpha chain 10090
9 4HUU 1 A, D H-2 class I histocompatibility antigen, D-B alpha chain 10090
10 1JUF 1 A H2-Db major histocompatibility antigen extracellular domain 10090
11 3CC5 1 A, D H-2 class I histocompatibility antigen, D-B alpha chain Extracellular part, UNP residues 25-300 10090
12 3QUL 1 A, D, G, J H-2 class I histocompatibility antigen, D-B alpha chain UNP Residues 25-362 10090
13 5E8O 1 A, D H-2 class I histocompatibility antigen, D-B alpha chain 10090
14 5E8P 1 A, D H-2 class I histocompatibility antigen, D-B alpha chain 10090
15 2ZOK 1 A, C, E, G H-2 class I histocompatibility antigen, D-B alpha chain extracellular domain, UNP residues 25-299 10090
16 4HUX 1 A H-2 class I histocompatibility antigen, D-B alpha chain 10090
17 5WLG 1 A, F H-2 class I histocompatibility antigen, D-B alpha chain 10090
18 4L8B 1 A H-2 class I histocompatibility antigen, D-B alpha chain UNP residues 25-304 10090
19 3TBV 1 A, C, E, G H-2 class I histocompatibility antigen, D-B alpha chain RESIDUES 25-362 10090
20 1JPF 1 A H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN extracellular domains 10090
21 1YN6 1 A H-2 class I histocompatibility antigen, D-B alpha chain 10090
22 5WLI 1 A, D, G, J H-2 class I histocompatibility antigen, D-B alpha chain 10090
23 1INQ 1 A H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN 10090
24 1YN7 1 A H-2 class I histocompatibility antigen, D-B alpha chain 10090
25 3TBW 1 A, C, E, G H-2 class I histocompatibility antigen, D-B alpha chain RESIDUES 25-362 10090
26 1JPG 1 A H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN extracellular domains 10090
27 1HOC 1 A CLASS I HISTOCOMPATIBILITY ANTIGEN (H2-DB) (ALPHA CHAIN) 10090
28 5JWD 1 A H-2 class I histocompatibility antigen, D-B alpha chain 10090
29 5JWE 1 A, C, E, G H-2 class I histocompatibility antigen, D-B alpha chain 10090
30 3WS3 1 A, C H-2 class I histocompatibility antigen, D-B alpha chain EXTRACELLULAR DOMAIN 10090
31 5E8N 1 A, D, G, J H-2 class I histocompatibility antigen, D-B alpha chain 10090
32 3CH1 1 A, D, G, J H-2 class I histocompatibility antigen, D-B alpha chain UNP residues 25-300 10090
33 1WBY 1 A H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN EXTRACELLULAR DOMAIN, RESIDUES 25-300 10090
34 3TBT 1 A, D, G, J H-2 class I histocompatibility antigen, D-B alpha chain RESIDUES 25-362 10090
35 4HUV 1 A, D H-2 class I histocompatibility antigen, D-B alpha chain 10090
36 5MZM 1 A, D H-2 class I histocompatibility antigen, D-B alpha chain 10090
37 1QLF 1 A MHC CLASS I H-2DB HEAVY CHAIN FORMS HETEROTRIMER WITH CHAIN B (BETA-2-MICROGLOBULIN) AND CHAIN C (PEPTIDE ANTIGEN) EXTRACELLULAR DOMAINS 10090
38 3CPL 1 A, C H-2 class I histocompatibility antigen, D-B alpha chain residues 1-275 (UNIPROT 25-299) 10090
39 3QUK 1 A, D H-2 class I histocompatibility antigen, D-B alpha chain UNP Residues 25-362 10090
40 3TBS 1 A, D H-2 class I histocompatibility antigen, D-B alpha chain UNP RESIDUES 25-362 10090
41 4L8C 1 A, C, E, G H-2 class I histocompatibility antigen, D-B alpha chain UNP residues 25-304 10090
42 4NSK 1 A H-2 class I histocompatibility antigen, D-B alpha chain 10090
43 3FTG 1 A H-2 class I histocompatibility antigen, D-B alpha chain 10090
44 2CII 1 A H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN D-B ALPHA CHAIN RESIDUES 25-299 10090
45 5SWZ 1 A, F, K, P H-2 class I histocompatibility antigen, D-B alpha chain 10090
46 1ZHB 1 A, D, G, J H-2 class I histocompatibility antigen, D-B alpha chain EXTRAcellular part 10090
47 2F74 1 A, D H-2 class I histocompatibility antigen, D-B alpha chain 10090
48 3L3H 1 A H-2 class I histocompatibility antigen, D-B alpha chain 10090
49 4PG2 1 A H-2 class I histocompatibility antigen, D-B alpha chain UNP residues 25-299 10090
50 3CCH 1 A, D, G, J H-2 class I histocompatibility antigen, D-B alpha chain UNP residues 25-300 10090
51 2VE6 1 A, D, G, J H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN D-B ALPHA CHAIN RESIDUES 25-301 10090
52 3BUY 1 A H-2 class I histocompatibility antigen, D-B alpha chain residues 2-276 10090
53 4HUW 1 A, C, E, G H-2 class I histocompatibility antigen, D-B alpha chain 10090
54 6G9R 1 A, C, E, G H-2 class I histocompatibility antigen, D-B alpha chain UNP residues 25-300 10090
55 1FFP 1 A, D H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B, ALPHA CHAIN EXTRACELLULAR PORTION 10090
56 1FFO 1 A, D H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B, ALPHA CHAIN EXTRACELLULAR PORTION 10090
57 5TIL 1 A, D H-2 class I histocompatibility antigen, D-B alpha chain 10090
58 1FFN 1 A, D H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN EXTRACELLULAR PORTION 10090
59 1CE6 1 A PROTEIN (MHC CLASS I H-2DB HEAVY CHAIN) FRAGMENT: EXTRACELLULAR DOMAINS 10090
60 1FG2 1 A, D, G, J H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN EXTRACELLULAR ALPHA CHAIN (1,2,3) 10090
61 5SWS 1 A H-2 class I histocompatibility antigen, D-B alpha chain 10090
62 2ZOL 1 A, C H-2 class I histocompatibility antigen, D-B alpha chain extracellular domain, UNP residues 25-299 10090
63 3TBY 1 A, D, G, J H-2 class I histocompatibility antigen, D-B alpha chain RESIDUES 25-362 10090
64 4IHO 1 A, D H-2 class I histocompatibility antigen, D-B alpha chain UNP RESIDUES 25-300 10090
65 1N5A 1 A, D, G, J H-2 class I histocompatibility antigen, D-B alpha chain Extracellular part 10090
66 1BZ9 1 A PROTEIN (CLASS I HISTOCOMPATIBILITY ANTIGEN) 10090
67 1N3N 1 A, C, E, G H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN EXTRACELLULAR DOMAINS 10090
68 5TJE 1 A, C H-2 class I histocompatibility antigen, D-B alpha chain 10090
69 3PQY 1 A, F, K, P H-2 class I histocompatibility antigen, D-B alpha chain UNP residues 26-300 10090
70 5OPI 1 A H-2 class I histocompatibility antigen, D-B alpha chain 10090