Sequence Similarity Clusters for the Entities in PDB 1JHT

Entity #1 | Chains: A
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 118 229 54
95 % 157 285 64 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 178 347 38
70 % 447 833 6
50 % 452 847 7
40 % 477 893 8
30 % 478 918 13
Entity #2 | Chains: B
beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 406 728 2
95 % 438 777 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 446 795 4
70 % 544 1099 4
50 % 554 1123 3
40 % 554 1123 3
30 % 554 1123 9
Entity #3 | Chains: C
nonameric peptide ligand from the MART-1/Melan-A protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures