Sequence Similarity Clusters for the Entities in PDB 1JGU

Entity #1 | Chains: L
Antibody Light Chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 52365
95 % 33 164 166 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 36 174 155
70 % 315 2399 2
50 % 397 3045 2
40 % 397 3045 2
30 % 816 6183 1
Entity #2 | Chains: H
Antibody Heavy Chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 52364
95 % 1 2 36035 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 2 34450
70 % 388 2943 1
50 % 413 3094 1
40 % 413 3094 1
30 % 817 6183 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures