Sequence Similarity Clusters for the Entities in PDB 1JCK

Entity #1 | Chains: A,C
14.3.D T CELL ANTIGEN RECEPTOR protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 8837
95 % 10 11 3554 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.6
PDBFlex
90 % 21 22 1668
70 % 371 381 41
50 % 381 394 66
40 % 381 394 80
30 % 381 394 82
Entity #2 | Chains: B,D
STAPHYLOCOCCAL ENTEROTOXIN C3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 30053
95 % 29 29 1606 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.0
PDBFlex
90 % 29 29 1652
70 % 29 29 1669
50 % 49 49 831
40 % 58 60 524
30 % 86 89 395

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures