Sequence Similarity Clusters for the Entities in PDB 1JBO

Entity #1 | Chains: A
C-Phycocyanin alpha chain protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 9011
95 % 2 18 4514 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 2 18 4600
70 % 3 40 277
50 % 3 46 298
40 % 5 59 25
30 % 12 156 7
Entity #2 | Chains: B
C-Phycocyanin beta chain protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 18 3527
95 % 2 18 4564 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 2 18 4642
70 % 3 43 276
50 % 8 67 16
40 % 8 67 22
30 % 13 156 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures