Sequence Similarity Clusters for the Entities in PDB 1J3Y

Entity #1 | Chains: A,C,E,G
Hemoglobin alpha Chain protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 218 43
95 % 14 255 39 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 15 256 44
70 % 19 339 22
50 % 41 733 7
40 % 41 733 7
30 % 46 781 10
Entity #2 | Chains: B,D,F,H
Hemoglobin beta Chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 165 80
95 % 13 256 36 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 13 261 37
70 % 18 349 18
50 % 42 733 7
40 % 42 733 7
30 % 47 781 10

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures