Sequence Similarity Clusters for the Entities in PDB 1IVO

Entity #1 | Chains: A,B
Epidermal Growth Factor Receptor protein, length: 622 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 33450
95 % 10 12 5832 Flexibility: High
Max RMSD: 25.7, Avg RMSD: 10.9
PDBFlex
90 % 10 12 5664
70 % 10 12 5812
50 % 10 12 5596
40 % 31 38 1332
30 % 31 38 1349
Entity #2 | Chains: C,D
Epidermal growth factor protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 10379
95 % 3 6 9077 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.1
PDBFlex
90 % 3 6 9005
70 % 3 5 11698
50 % 3 13 5055
40 % 3 13 5020
30 % 3 13 4735

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures