Sequence Similarity Clusters for the Entities in PDB 1IJD

Entity #1 | Chains: A,C,E
LIGHT-HARVESTING PROTEIN B-800/820, ALPHA CHAIN protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34465
95 % 1 1 27137 Flexibility: No
Max RMSD: 0.0,
PDBFlex
90 % 1 1 25830
70 % 1 1 23536
50 % 4 4 4226
40 % 4 4 4174
30 % 4 4 4062
Entity #2 | Chains: B,D,F
LIGHT-HARVESTING PROTEIN B-800/820, BETA CHAIN protein, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34464
95 % 1 1 27136 Flexibility: No
,
PDBFlex
90 % 1 1 25829
70 % 4 4 4376
50 % 4 4 4171
40 % 4 4 4120
30 % 4 4 4013

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures