1IC5

CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD99A)-HEN LYSOZYME COMPLEX


Sequence Similarity Clusters for the Entities in PDB 1IC5

Entity #1 | Chains: L
LYSOZYME BINDING IG KAPPA CHAIN protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 14 5040
95 % 16 22 2978
90 % 16 24 2769
70 % 19 29 2160
50 % 141 413 20
40 % 154 438 23
30 % 465 1353 5
Entity #2 | Chains: H
IGG1 FAB CHAIN H protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73002
95 % 16 22 2979
90 % 16 22 3056
70 % 19 42 1181
50 % 320 901 4
40 % 320 918 5
30 % 466 1353 5
Entity #3 | Chains: Y
LYSOZYME C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 658 787 3
95 % 711 843 5
90 % 722 860 6
70 % 728 867 11
50 % 940 1095 8
40 % 962 1130 9
30 % 962 1132 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1XG0 3 C, D B-phycoerythrin beta chain 79257
2 1XF6 3 C, D B-phycoerythrin beta chain 79257
3 6XWK 2 BBB Phycocyanin beta subunit 1534976
4 5NB4 2 M, N, O, P, Q, R, S, T, U, V, W, X Phycoerythrin Beta subunit,Phycoerythrin Beta subunit There are three PEB chromophore molecules in the beta-subunit which are bound covalently to residues Cys80 (PEB186), Cys165 (PEB187) and Cys48/Cys59 (PEB188). 1534976
5 3L0F 2 B C-phycocyanin beta chain 146786
6 4LMS 2 B, D cryptophyte phycocyanin (beta chain) 3029
7 5NB3 2 M, N, O, P, Q, R, S, T, U, V, W, X Phycoerythrin Beta subunit,Phycoerythrin Beta subunit Three PEB chromophores are link covalently to Cys80 (PEB186), Cys165 (PEB187), and Cys48/Cys59 (PEB188) 1534976
8 6HRN 2 B Beta Subunit of Cyanobacterial Phycocyanin protein There are two chromophore molecules, phycocyanobilins (ligand ID: CYC), bound covalently to C-Phycocyanin beta subunit residues CYS82 and CYS153, respectively. 1180
9 1JBO 2 B C-Phycocyanin beta chain 32046
10 3KVS 2 B C-phycocyanin beta chain 130081
11 3O18 2 B C-phycocyanin beta subunit 32053
12 1QGW 3 C, D PROTEIN (CRYPTOPHYTAN PHYCOERYTHRIN (BETA CHAIN)) 79257
13 3O2C 2 B C-phycocyanin beta subunit 32053
14 4LM6 2 B, D cryptophyte phycocyanin beta chain 77927
15 1PHN 2 B PHYCOCYANIN CHAIN A IS THE ALPHA CHAIN, CHAIN B IS THE BETA CHAIN 2771
16 1CPC 2 B, L C-PHYCOCYANIN (BETA SUBUNIT) 1197
17 3V57 2 B, D Phycoerythrin beta subunit 35688
18 1KTP 2 B C-PHYCOCYANIN BETA SUBUNIT 32053
19 4LMX 2 B, D, F, H, J, L cryptophyte phycoerythrin (beta chain) 464988
20 4ZIZ 2 B C-phycocyanin beta chain 146786
21 3V58 2 B, D Phycoerythrin beta subunit 35688
22 3BRP 2 B C-phycocyanin beta chain 130081
23 1B8D 2 B, L PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (BETA CHAIN)) PHYCOERYTHROBILIN PHYCOUROBILIN N-GAMMA METHYLATION OF ASN B72 AND ASN L72 42003
24 4Q70 2 B C-phycocyanin beta chain 146786
25 5FVB 2 M, N, O, P, Q, R, S, T, U, V, W, X C-PHYCOERYTHRIN BETA SUBUNIT PROTEIN-CHROMOPHORE LINK BETWEEN CYS-80 AND PEB-1185, PROTEIN-CHROMOPHORE LINK BETWEEN CYS-165 AND PEB-1886, PROTEIN- CHROMOPHORE LINK BETWEEN CYS-48/CYS-59 AND PEB-1187 FRAGMENT BETA-CHAIN RESIDUES 1-184 1534976
26 5TOU 2 B, D, F, H, J, L Phycocyanin beta-1 subunit 1357935
27 5MJP 2 B C-phycocyanin beta chain 146786
28 2VJH 2 B, D PHYCOERYTHRIN BETA SUBUNIT 33072
29 2BV8 2 B, D, F, L, N, P C-PHYCOCYANIN BETA SUBUNIT N-METHYL-ASPARAGINE 72 A (ALPHA CHAINS), PHYCOCYANOBILIN 84 A (ALPHA CHAINS), PHYCOCYANOBILIN 82 B AND 153 B (BETA CHAINS) 2510777
30 5AQD 2 M, N, O, P, Q, R, S, T, U, V, W, X PHYCOERYTHRIN BETA SUBUNIT PROTEIN-CHROMOPHORE LINK BETWEEN CYS-80 AND PEB-186 PROTEIN-CHROMOPHORE LINK BETWEEN CYS-165 AND PEB-187 PROTEIN-CHROMOPHORE LINK BETWEEN CYS-48 AND PEB-188 PROTEIN-CHROMOPHORE LINK BETWEEN CYS-59 AND PEB-188 BETA CHAIN, RESIDUES 1-184 1534976
31 5MJM 2 B C-phycocyanin beta chain 146786
32 5OOK 2 B Phycocyanin, beta subunit 155978
33 5B13 2 G, H, I, J, K, L Phycoerythrin beta subunit CYC and PUB are covalently attached to the polypeptide chain. 2822
34 1GH0 2 B, D, F, H, J, L, N, P, R, T, V, X C-PHYCOCYANIN BETA SUBUNIT 118562
35 1HA7 2 B, D, F, H, J, L, N, P, R, T, V, X C-PHYCOCYANIN BETA CHAIN BETA-CHAIN 118562
36 5O7M 2 B C-phycocyanin beta chain 146786
37 1EYX 2 B, L R-PHYCOERYTHRIN BETA CHAIN 2510777
38 1F99 2 B, L, N R-PHYCOCYANIN beta chain 65404
39 4F0T 2 B C-phycocyanin beta chain 1148
40 4N6S 2 B C-phycocyanin beta subunit 32053
41 6JPR 2 B, D, F, H, J, L Phycocyanin GB MK561023 1177
42 2VML 2 B, D, F, H, J, L PHYCOCYANIN BETA CHAIN 33072
43 5MJQ 2 B C-phycocyanin beta chain 146786
44 4H0M 2 B, D, F, H, J, L, N, P, R, T, V, X C-phycocyanin beta chain 32046
45 4Z8K 2 B C-phycocyanin beta chain 146786
46 1I7Y 2 B C-PHYCOCYANIN BETA SUBUNIT 32053
47 1LIA 2 B, L R-PHYCOERYTHRIN 65404
48 4GY3 2 B C-phycocyanin beta subunit 32053
49 2VJR 2 B PHYCOCYANIN BETA CHAIN 33072
50 1ON7 2 B C-phycocyanin beta subunit 32053
51 4YJJ 2 B, D Beta Subunit of Cyanobacterial Phycocyanine protein 1198
52 5UVK 2 B C-phycocyanin beta chain 146786
53 2C7J 2 B PHYCOERYTHROCYANIN BETA CHAIN 83541
54 4L1E 2 B, D, F, H, J, L Phycocyanin beta chain 574115
55 2C7L 2 B PHYCOERYTHROCYANIN BETA CHAIN 83541
56 2UUM 2 B, D, F, H, J, L, N, P, R, T, V C-PHYCOCYANIN BETA CHAIN PHYCOCYANOBILIN ATTACHED ALFA-84 CYSTIENE RESIDUE AND BETA-82 AND 153 MONOMERS. 1157
57 2UUM 3 X C-PHYCOCYANIN BETA CHAIN PHYCOCYANOBILIN ATTACHED ALFA-84 CYSTIENE RESIDUE AND BETA-82 AND 153 MONOMERS. 1157
58 2UUL 2 B, F, J, L, N, P, R, T, V, X C-PHYCOCYANIN BETA CHAIN PHYCOCYANOBILIN ATTACHED ALFA-84 CYSTEINE RESIDUE AND BETA-82 AND 153 MONOMERS 1199
59 2UUL 4 D C-PHYCOCYANIN BETA CHAIN PHYCOCYANOBILIN ATTACHED ALFA-84 CYSTEINE RESIDUE AND BETA-82 AND 153 MONOMERS, RESIDUES 9 AND 10 ARE VAL SER IN THIS CHAIN WHEREAS IT IS ALA ALA IN OTHER CHAINS 1199
60 2UUL 5 H C-PHYCOCYANIN BETA CHAIN PHYCOCYANOBILIN ATTACHED ALFA-84 CYSTEINE RESIDUE AND BETA-82 AND 153 MONOMERS, RESIDUE 74 IS ASP IN THIS CHAIN WHERE AS IT IS TYR IN OTHER CHAINS 1199
61 2C7K 2 B PHYCOERYTHROCYANIN BETA CHAIN 83541
62 2UUN 2 B, F, H, J, L, N, P, R, T, V, X C-PHYCOCYANIN PHYCOCYANOBILIN ATTACHED AT ALFA CHAIN 84 AND BETA CHAIN 82 AND 153 47254
63 2UUN 3 D C-PHYCOCYANIN PHYCOCYANOBILIN ATTACHED AT ALFA CHAIN 84 AND BETA CHAIN 82 AND 153, RESIDUE 40 IS VAL WHEREAS IT IS ALA IN ALL OTHER CHAINS 47254
64 4GXE 2 B C-phycocyanin beta subunit 32053
65 6KGX 10 D2, D6, D7, DB, DF, DI, F2, F6, F7, FB, FF, FI, H2, H6, H7, HB, HF, HI, J2, J6, J7, JB, JF, JI, L2, L6, L7, LB, LF, LI, N2, N6, N7, NB, NF, NI C-phycocyanin beta subunit 35688
66 6KGX 2 11, 14, A5, AC, B1, B3, B4, B5, BC, BD, BE, BG, C5, C9, CC, CJ, D1, D3, D4, D8, DA, DD, DE, DG, E9, EJ, F1, F3, F4, F5, F8, FA, FC, FD, FE, FG, G5, G9, GC, GJ, H1, H3, H4, H5, H8, HA, HC, HD, HE, HG, I5, I9, IC, IJ, J1, J3, J4, J8, JA, JD, JE, JG, K5, K9, KC, KJ, L1, L3, L4, L5, L8, LA, LC, LD, LE, LG, M9, MJ, N3, N8, NA, ND, NE, NG, O1, O4, O9, OJ, P2, P3, P6, P7, P8, PA, PB, PD, PE, PF, PG, PI, Q1, Q4, Q9, QJ, R2, R3, R6, R7, R8, RA, RB, RD, RE, RF, RG, RI, S1, S4, S9, SJ, T2, T3, T6, T7, T8, TA, TB, TD, TE, TF, TG, TI, U1, U4, U9, UJ, V2, V3, V6, V7, V8, VA, VB, VD, VE, VF, VG, VI, W1, W4, W9, WJ, X3, X8, XA, XD, XE, XG, Y1, Y2, Y4, Y6, Y7, Y9, YB, YF, YI, YJ, Z1, Z4, Z8, ZA, ZE, ZG, a1, a2, a4, a6, a7, aB, aF, aI, bE, bG, c2, c6, c7, c8, cA, cB, cF, cI, d1, d4, dE, dG, e2, e6, e7, e8, eA, eB, eF, eI, f1, f4, fE, fG, g2, g6, g7, g8, gA, gB, gF, gI, h1, h4, hE, hG, i2, i6, i7, i8, iA, iB, iF, iI, j1, j4, jE, jG, k2, k6, k7, k8, kA, kB, kF, kI, l1, l4, lE, lG, m2, m6, m7, m8, mA, mB, mF, mI, n1, n4, nE, nG, pE, pG, q1, q4, rE, rG, s1, s4, tE, tG, u1, u4, vE, vG, w1, w4, y1, y4 B-phycoerythrin beta chain 35688
67 5Y6P 11 A8, B3, B4, B5, B6, B7, B9, C8, D3, D4, D5, D6, D7, D9, E8, F2, F3, F4, F5, F6, F7, F9, G8, H2, H3, H4, H5, H6, H7, H9, I8, J2, J3, J4, J5, J6, J7, J9, K8, L2, L3, L4, L5, L6, L7, L9, M8, N2, N3, N4, N5, N6, N7, N9, O8, P2, P3, P4, P5, P6, P7, P9, Q8, R2, R3, R4, R5, R6, R7, R9, T2, T3, T4, T5, T6, T7, T9, V2, V3, V4, V5, V6, V7, V9, X2, X3, X4, X6, X7, Z2, Z3, Z4, Z6, Z7, a6, a7, aB, aD, aF, aH, aJ, aL, aN, aP, aR, aT, aV, an, ap, ar, at, av, ax, az, b6, b7, bB, bD, bF, bH, bJ, bL, bN, bP, bR, bT, bV, bn, bo, bp, bq, br, bs, bz, c6, c7, cB, cE, cF, cH, cJ, cL, cM, cN, cO, cP, cQ, cR, cY, cn, co, cp, cq, cr, cs, cz, d6, d7, dB, dD, dF, dH, dK, dL, dN, dP, dR, dT, dV, dX, dY, dd, df, dh, di, dj, dl, dn, dp, dr, dt, dv, e6, e7, eB, eD, eF, eH, eJ, eL, eN, eP, eR, eT, eV, eX, eb, ec, ee, eg, ei, el, en, ep, er, et, ev, f2, f3, f8, fa, fc, ff, fi, fj, fm, fo, fq, fs, fu, fw, fy, g8, ga, gd, ge, gg, gi, gk, gn, gp, gr, gt, gv, gx, h2, h3, h8, hB, hD, hG, hH, hJ, hL, hN, hP, hR, hT, hV, hX, iC, iD, iE, iF, iG, iH, j2, j3, jI, jJ, jK, jL, jM, jN, jO, jP, kQ, kR, kS, kT, kU, kV, kW, kX, l2, l3, l6, l7, lb, ld, lf, lh, lj, ll, ln, lp, lr, lt, lv, lx, n2, n3, n4, n5, n6, n7, n8, n9, o8, p2, p3, p4, p5, p6, p7, p8, p9, r2, r3, r4, r5, r6, r7, r9, t2, t3, t4, t5, t6, t7, t9, v2, v3, v4, v5, v6, v7, v9, w8, x2, x3, x4, x5, x6, x7, x9, y6, y7, y8, z2, z3, z4, z5, z6, z7, z9 R-phycoerythrin beta chain 35689
68 5Y6P 18 W8, Y8, ab, ad, af, ah, aj, al, bb, bd, bf, bh, bj, bl, c4, c5, cb, cd, cf, ch, cj, cl, e4, e5, f9, g4, g5, h4, h5, h9, j4, j5, j9, l4, l5, l9 beta_PC 35689