Sequence Similarity Clusters for the Entities in PDB 1HQR

Entity #1 | Chains: A
HLA-DR ALPHA CHAIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 81 90 285
95 % 92 101 306 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 92 101 320
70 % 107 118 304
50 % 169 190 179
40 % 169 190 191
30 % 169 190 201
Entity #2 | Chains: B
HLA-DR BETA CHAIN protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 9385
95 % 2 4 9555 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 89 96 350
70 % 103 112 316
50 % 147 162 204
40 % 147 162 219
30 % 147 162 231
Entity #3 | Chains: C
MYELIN BASIC PROTEIN protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
STREPTOCOCCAL PYROGENIC EXOTOXIN C protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15627
95 % 2 3 16452 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.8
PDBFlex
90 % 2 3 13994
70 % 2 3 15178
50 % 2 3 13706
40 % 4 5 6794
30 % 84 90 446

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5NI9 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
2 4X5W 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain extracellular, UNP residues 30-227 9606
3 5NIG 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
4 4MD5 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
5 4MDJ 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
6 6ATF 2 B, E MHC class II antigen UNP residues 30-219 9606
7 3C5J 2 B MHC class II antigen UNP residues 30-219 9606
8 4MD4 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
9 4MDI 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
10 3PDO 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain extracellular domain 9606
11 6HBY 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
12 6ATI 2 B, E MHC class II antigen UNP residues 30-219 9606
13 1KLU 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN residues 30-219 9606
14 6BIY 2 B HLA class II DR-beta (HLA-DR B) 9606
15 6NIX 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
16 5JLZ 2 B, D HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
17 1FV1 2 B, E MAJOR HISTOCOMPATIBILITY COMPLEX BETA CHAIN 9606
18 6BIJ 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
19 6CPN 2 B HLA class II histocompatibility antigen, DRB1-11 beta chain 9606
20 6BIZ 2 B HLA class II DR-beta (HLA-DR B) 9606
21 2G9H 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
22 6BIX 2 B HLA class II DR-beta (HLA-DR B) 9606
23 4MD0 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
24 4I5B 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
25 4AEN 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DRB1-1 BETA CHAIN EXTRACELLULAR DOMAIN, RESIDUES 30-227 9606
26 1D5Z 2 B PROTEIN (HLA CLASS II HISTOCOMPATIBILITY ANTIGEN) DR-4 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
27 3L6F 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-221 9606
28 1PYW 2 B HLA class II histocompatibility antigen, DR-1 beta chain Extracellular domain of HLA-DRB1 9606
29 1D5M 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN DR-4 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
30 4MCY 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
31 4OV5 2 B, E, H, K, N, Q HLA class II histocompatibility antigen, DRB1-1 beta chain Secreted extracellular domain (UNP residues 30-219) 9606
32 6BIR 2 B MHC class II antigen 9606
33 3QXD 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-219 9606
34 3S5L 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain MHC class II b chain 9606
35 4Y19 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain UNP residues 30-219 9606
36 1JWU 2 B HLA class II histocompatibility antigen, DR-1 beta chain 9606
37 4H25 2 B, E MHC class II antigen 9606
38 2Q6W 2 B, E HLA class II histocompatibility antigen, DRB3-1 beta chain sequence database residues 30-219 9606
39 6BIL 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
40 1SJH 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain Extracellular domain of HLA-DRB*0101 9606
41 4MCZ 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
42 1SJE 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain Extracelluar domain of HLA-DRB*0101 9606
43 6CPO 2 B, E HLA-DRB1 protein 9606
44 1KLG 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN residues 30-219 9606
45 2XN9 5 E MAJOR HISTOCOMPATIBILITY COMPLEX CLASS II BETA CHAIN CHAIN DRB1 0101 EXTRACELLULAR DOMAIN, RESIDUES 30-219 9606
46 1D6E 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN DR-4 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
47 2IPK 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain Extracellular domain, residues 30-219 9606
48 1J8H 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-4 BETA CHAIN Extracellular Domain 9606
49 6CQN 2 B HLA class II histocompatibility antigen, DRB1-11 beta chain 9606
50 6BIN 3 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
51 6CQL 2 B HLA class II histocompatibility antigen, DRB1-11 beta chain 9606
52 1AQD 2 B, E, H, K HLA-DR1 CLASS II HISTOCOMPATIBILITY PROTEIN SECRETED EXTRACELLULAR DOMAINS 9606
53 1T5X 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain Extracellular domain 9606
54 5LAX 2 B, D HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular domain, UNP residues 26-206. ADLVPR ARE A PART OF EXPRESSION TAG 9606
55 1JWS 2 B HLA class II histocompatibility antigen, DR-1 beta chain 9606
56 4FQX 5 B HLA class II histocompatibility antigen, DRB1-1 beta chain unp residues 30-221 9606
57 1T5W 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain Extracellular domain 9606
58 4E41 2 B, G HLA class II histocompatibility antigen, DRB1-1 beta chain unp residues 30-219 9606
59 6CPL 2 B HLA class II histocompatibility antigen, DRB1-11 beta chain 9606
60 1HXY 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN 9606
61 1JWM 2 B HLA class II histocompatibility antigen, DR-1 beta chain 9606
62 3PGC 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-227 9606
63 4H26 2 B, E MHC class II antigen 9606
64 3QXA 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-219 9606
65 2ICW 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain residues 30-219 9606
66 1D5X 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN DR-4 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
67 2SEB 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN EXTRACELLULAR DOMAIN 9606
68 3PGD 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-227 9606
69 6ATZ 2 B, D MHC class II antigen UNP residues 32-219 9606
70 3S4S 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-221 9606
71 6CQJ 2 B, E, H HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
72 1FYT 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN EXTRACELLULAR DOMAIN 9606
73 1KG0 2 B MHC class II Receptor HLA-DR1 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
74 1DLH 2 B, E CLASS II HISTOCOMPATIBILITY ANTIGEN (HLA-DR1) (BETA CHAIN) 9606
75 6CQQ 2 B, G HLA-DRB1 protein 9606
76 2IAM 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain residues 1-190 (30-219) 9606
77 1R5I 2 B, F HLA class II histocompatibility antigen, DRB1-1 beta chain beta chain of class II MHC (residues 30-219) 9606
78 1BX2 2 B, E PROTEIN (HLA-DR2) EXTRACELLULAR DOMAINS BETA 1, BETA 2 9606
79 6BIV 2 A HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
80 4IS6 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain UNP residues 30-221 9606
81 4GBX 4 B HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
82 2IAN 2 B, G, L, Q HLA class II histocompatibility antigen, DRB1-1 beta chain residues 1-190 (30-219) 9606
83 2OJE 2 B, F HLA class II histocompatibility antigen, DRB1-1 beta chain precursor extracellular domain, residues 30-219 9606
84 1A6A 2 B HLA class II histocompatibility antigen, DR-1 beta chain 9606
85 1SEB 2 B, F HLA CLASS II HISTOCOMPATIBILITY ANTIGEN EXTRACELLULAR DOMAIN 9606
86 4C56 5 E, K MHC CLASS II ANTIGEN IMMUNOGLOBULIN DOMAIN 9606
87 6CQR 2 B, G HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
88 2FSE 2 B, D HLA class II histocompatibility antigen, DRB1-1 beta chain chains B and D form a chimera with chains A and C, respectively 10090
89 1HQR 2 B HLA-DR BETA CHAIN 9606
90 2WBJ 2 B, F HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DRB1-15 BETA CHAIN MHC CLASS II, RESIDUES 29-227 9606
91 1ZGL 2 B, E, H, K major histocompatibility complex, class II, DR beta 5 9606
92 1LO5 2 B HLA class II histocompatibility antigen, DR-1 beta chain extracellular domain 9606
93 1H15 2 B, E HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR BETA 1 CHAIN BETA CHAIN, RESIDUES 30-219 9606
94 4H1L 2 B, E MHC class II antigen 9606
95 4Y1A 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain UNP residues 30-219 9606
96 1YMM 2 B HLA class II histocompatibility antigen, DR beta chain 9606