Sequence Similarity Clusters for the Entities in PDB 1HQR

Entity #1 | Chains: A
HLA-DR ALPHA CHAIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 81 90 284
95 % 92 101 306 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 92 101 319
70 % 107 118 303
50 % 169 190 181
40 % 169 190 190
30 % 169 190 202
Entity #2 | Chains: B
HLA-DR BETA CHAIN protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 9087
95 % 2 4 9829 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 89 96 353
70 % 103 112 317
50 % 147 162 205
40 % 147 162 221
30 % 147 162 232
Entity #3 | Chains: C
MYELIN BASIC PROTEIN protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
STREPTOCOCCAL PYROGENIC EXOTOXIN C protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 17430
95 % 2 3 15940 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.8
PDBFlex
90 % 2 3 15628
70 % 2 3 14723
50 % 2 3 13322
40 % 4 5 6658
30 % 84 90 440

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5NI9 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
2 4X5W 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain extracellular, UNP residues 30-227 9606
3 5NIG 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
4 4MD5 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
5 4MDJ 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
6 6ATF 2 B, E MHC class II antigen UNP residues 30-219 9606
7 3C5J 2 B MHC class II antigen UNP residues 30-219 9606
8 4MD4 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
9 4MDI 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
10 3PDO 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain extracellular domain 9606
11 6HBY 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
12 6ATI 2 B, E MHC class II antigen UNP residues 30-219 9606
13 1KLU 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN residues 30-219 9606
14 1FNG 2 B, D PROTEIN (MHC CLASS II I-EK, BETA CHAIN) WITH COVALENTLY BOUND HB PEPTIDE SOLUBLE ECTO-DOMAIN PLUS COVALENTLY ATTACHED HB PEPTIDE 10090
15 6BIY 2 B HLA class II DR-beta (HLA-DR B) 9606
16 1FNE 2 B, D PROTEIN (MHC CLASS II I-EK, BETA CHAIN) WITH COVALENTLY BOUND HB(D73) PEPTIDE SOLUBLE ECTO-DOMAIN WITH COVALENTLY ATTACHED HB PEPTIDE 10090
17 6NIX 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
18 5JLZ 2 B, D HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
19 1FV1 2 B, E MAJOR HISTOCOMPATIBILITY COMPLEX BETA CHAIN 9606
20 6BIJ 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
21 6CPN 2 B HLA class II histocompatibility antigen, DRB1-11 beta chain 9606
22 6BIZ 2 B HLA class II DR-beta (HLA-DR B) 9606
23 2G9H 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
24 6BIX 2 B HLA class II DR-beta (HLA-DR B) 9606
25 4MD0 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
26 4I5B 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
27 4AEN 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DRB1-1 BETA CHAIN EXTRACELLULAR DOMAIN, RESIDUES 30-227 9606
28 1D5Z 2 B PROTEIN (HLA CLASS II HISTOCOMPATIBILITY ANTIGEN) DR-4 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
29 3L6F 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-221 9606
30 1PYW 2 B HLA class II histocompatibility antigen, DR-1 beta chain Extracellular domain of HLA-DRB1 9606
31 1D5M 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN DR-4 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
32 4MCY 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
33 4OV5 2 B, E, H, K, N, Q HLA class II histocompatibility antigen, DRB1-1 beta chain Secreted extracellular domain (UNP residues 30-219) 9606
34 6BIR 2 B MHC class II antigen 9606
35 3QXD 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-219 9606
36 3S5L 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain MHC class II b chain 9606
37 6BGA 2 B 2B4 peptide,MHC I-Ek B chain 10090
38 4Y19 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain UNP residues 30-219 9606
39 1JWU 2 B HLA class II histocompatibility antigen, DR-1 beta chain 9606
40 4H25 2 B, E MHC class II antigen 9606
41 1IEA 2 B, D MHC CLASS II I-EK WITH COVALENTLY BOUND HB PEPTIDE 10090
42 2Q6W 2 B, E HLA class II histocompatibility antigen, DRB3-1 beta chain sequence database residues 30-219 9606
43 6BIL 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
44 1SJH 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain Extracellular domain of HLA-DRB*0101 9606
45 4MCZ 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
46 1SJE 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain Extracelluar domain of HLA-DRB*0101 9606
47 6CPO 2 B, E HLA-DRB1 protein 9606
48 1KLG 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN residues 30-219 9606
49 2XN9 5 E MAJOR HISTOCOMPATIBILITY COMPLEX CLASS II BETA CHAIN CHAIN DRB1 0101 EXTRACELLULAR DOMAIN, RESIDUES 30-219 9606
50 1D6E 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN DR-4 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
51 2IPK 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain Extracellular domain, residues 30-219 9606
52 1J8H 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-4 BETA CHAIN Extracellular Domain 9606
53 6CQN 2 B HLA class II histocompatibility antigen, DRB1-11 beta chain 9606
54 6BIN 3 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
55 1KTD 2 B, D Fusion protein consisting of cytochrome C peptide, glycine rich linker, and MHC E-beta-k Fusion protein consists of pigeon cytochrome C peptide, residues 1-14 (AADLIAYLKQASAK), Glycine rich linker, residues 15-30 (GGGGSLVGGGSGGGGS) and mouse MHC E-beta-k chain 10090
56 6CQL 2 B HLA class II histocompatibility antigen, DRB1-11 beta chain 9606
57 4P2O 2 B MHC class II E-beta-k 10090
58 1AQD 2 B, E, H, K HLA-DR1 CLASS II HISTOCOMPATIBILITY PROTEIN SECRETED EXTRACELLULAR DOMAINS 9606
59 1T5X 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain Extracellular domain 9606
60 5LAX 2 B, D HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular domain, UNP residues 26-206. ADLVPR ARE A PART OF EXPRESSION TAG 9606
61 1JWS 2 B HLA class II histocompatibility antigen, DR-1 beta chain 9606
62 4FQX 5 B HLA class II histocompatibility antigen, DRB1-1 beta chain unp residues 30-221 9606
63 1I3R 2 B, D, F, H FUSION PROTEIN CONSISTING OF MHC E-BETA-K PRECURSOR, GLYCINE RICH LINKER, AND HEMOGLOBIN BETA-2 CHAIN 10090
64 1T5W 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain Extracellular domain 9606
65 1R5V 3 B, D MHC H2-IE-beta 10090
66 4E41 2 B, G HLA class II histocompatibility antigen, DRB1-1 beta chain unp residues 30-219 9606
67 6CPL 2 B HLA class II histocompatibility antigen, DRB1-11 beta chain 9606
68 1HXY 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN 9606
69 1JWM 2 B HLA class II histocompatibility antigen, DR-1 beta chain 9606
70 3PGC 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-227 9606
71 4H26 2 B, E MHC class II antigen 9606
72 3QXA 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-219 9606
73 2ICW 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain residues 30-219 9606
74 1D5X 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN DR-4 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
75 2SEB 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN EXTRACELLULAR DOMAIN 9606
76 3PGD 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-227 9606
77 6ATZ 2 B, D MHC class II antigen UNP residues 32-219 9606
78 3S4S 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-221 9606
79 6CQJ 2 B, E, H HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
80 1FYT 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN EXTRACELLULAR DOMAIN 9606
81 1KG0 2 B MHC class II Receptor HLA-DR1 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
82 3QIU 2 B MHC CLASS II H2-IA-BETA CHAIN 10090
83 1DLH 2 B, E CLASS II HISTOCOMPATIBILITY ANTIGEN (HLA-DR1) (BETA CHAIN) 9606
84 3QIB 2 B MHC class II E-beta-k unp residues 29-224 10090
85 1IEB 2 B, D MHC CLASS II I-EK WITH COVALENTLY BOUND HSP70 PEPTIDE 10090
86 6CQQ 2 B, G HLA-DRB1 protein 9606
87 2IAM 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain residues 1-190 (30-219) 9606
88 1R5I 2 B, F HLA class II histocompatibility antigen, DRB1-1 beta chain beta chain of class II MHC (residues 30-219) 9606
89 1BX2 2 B, E PROTEIN (HLA-DR2) EXTRACELLULAR DOMAINS BETA 1, BETA 2 9606
90 6BIV 2 A HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
91 1KT2 2 B, D Fusion protein consisting of cytochrome C peptide, glycine rich linker, and MHC E-beta-k Fusion protein consists of moth cytochrome C peptide, residues 1-14 (ADLIAYLKQATK), Glycine rich linker, residues 15-30 (GGGGSLVPRGSGGGGS) and mouse MHC E-beta-k chain 304329
92 4IS6 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain UNP residues 30-221 9606
93 4GBX 4 B HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
94 2IAN 2 B, G, L, Q HLA class II histocompatibility antigen, DRB1-1 beta chain residues 1-190 (30-219) 9606
95 2OJE 2 B, F HLA class II histocompatibility antigen, DRB1-1 beta chain precursor extracellular domain, residues 30-219 9606
96 1A6A 2 B HLA class II histocompatibility antigen, DR-1 beta chain 9606
97 1SEB 2 B, F HLA CLASS II HISTOCOMPATIBILITY ANTIGEN EXTRACELLULAR DOMAIN 9606
98 4P2Q 2 B, G, L, Q MHC class II E-beta-k 10090
99 4C56 5 E, K MHC CLASS II ANTIGEN IMMUNOGLOBULIN DOMAIN 9606
100 6CQR 2 B, G HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
101 2FSE 2 B, D HLA class II histocompatibility antigen, DRB1-1 beta chain chains B and D form a chimera with chains A and C, respectively 10090
102 4P2R 2 B, G, L, Q MHC class II E-beta-k 10090
103 1HQR 2 B HLA-DR BETA CHAIN 9606
104 3QIW 2 B MHC CLASS II H2-IA-BETA CHAIN unp residues 29-224 10090
105 2WBJ 2 B, F HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DRB1-15 BETA CHAIN MHC CLASS II, RESIDUES 29-227 9606
106 1ZGL 2 B, E, H, K major histocompatibility complex, class II, DR beta 5 9606
107 1LO5 2 B HLA class II histocompatibility antigen, DR-1 beta chain extracellular domain 9606
108 1H15 2 B, E HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR BETA 1 CHAIN BETA CHAIN, RESIDUES 30-219 9606
109 1R5W 2 B, D MHC H2-IE-beta 10090
110 4H1L 2 B, E MHC class II antigen 9606
111 4Y1A 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain UNP residues 30-219 9606
112 1YMM 2 B HLA class II histocompatibility antigen, DR beta chain 9606