Sequence Similarity Clusters for the Entities in PDB 1HQR

Entity #1 | Chains: A
HLA-DR ALPHA CHAIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 81 90 284
95 % 92 101 306 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 92 101 319
70 % 107 118 303
50 % 169 190 181
40 % 169 190 190
30 % 169 190 202
Entity #2 | Chains: B
HLA-DR BETA CHAIN protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 9087
95 % 2 4 9829 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 89 96 353
70 % 103 112 317
50 % 147 162 205
40 % 147 162 221
30 % 147 162 232
Entity #3 | Chains: C
MYELIN BASIC PROTEIN protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
STREPTOCOCCAL PYROGENIC EXOTOXIN C protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 17430
95 % 2 3 15940 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.8
PDBFlex
90 % 2 3 15628
70 % 2 3 14723
50 % 2 3 13322
40 % 4 5 6658
30 % 84 90 440

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5NI9 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
2 4X5W 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain extracellular, UNP residues 30-227 9606
3 5NIG 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
4 4MD5 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
5 4MDJ 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
6 4P5M 2 B, D, F, H peptide,HLA class II histocompatibility antigen, DP beta 1 chain 9606
7 1UVQ 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN 9606
8 6ATF 2 B, E MHC class II antigen UNP residues 30-219 9606
9 3C5J 2 B MHC class II antigen UNP residues 30-219 9606
10 4MD4 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
11 4MDI 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
12 6U3M 2 B, D MHC class II HLA-DQ-beta-1 9606
13 5KSA 2 B HLA class II histocompatibility antigen, DQ beta 1 chain 9606
14 6KVM 2 B MHC class II beta chain 2 9031
15 3PDO 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain extracellular domain 9606
16 6HBY 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
17 6ATI 2 B, E MHC class II antigen UNP residues 30-219 9606
18 1IAK 2 B MHC CLASS II I-AK WITH COVALENTLY BOUND HEL PEPTIDE 10090
19 6MFG 2 E, F MHC class II HLA-DQ-beta-1 - DQ2-glia-alpha1 chimeric protein 9606
20 1KLU 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN residues 30-219 9606
21 6DFX 2 B, E MHC class II antigen 9606
22 5UJT 2 B, E, H MHC class II HLA-DQ-beta-1 9606
23 1FNG 2 B, D PROTEIN (MHC CLASS II I-EK, BETA CHAIN) WITH COVALENTLY BOUND HB PEPTIDE SOLUBLE ECTO-DOMAIN PLUS COVALENTLY ATTACHED HB PEPTIDE 10090
24 6BIY 2 B HLA class II DR-beta (HLA-DR B) 9606
25 1FNE 2 B, D PROTEIN (MHC CLASS II I-EK, BETA CHAIN) WITH COVALENTLY BOUND HB(D73) PEPTIDE SOLUBLE ECTO-DOMAIN WITH COVALENTLY ATTACHED HB PEPTIDE 10090
26 6NIX 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
27 5JLZ 2 B, D HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
28 1FV1 2 B, E MAJOR HISTOCOMPATIBILITY COMPLEX BETA CHAIN 9606
29 6BIJ 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
30 6CPN 2 B HLA class II histocompatibility antigen, DRB1-11 beta chain 9606
31 6BIZ 2 B HLA class II DR-beta (HLA-DR B) 9606
32 2G9H 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
33 6BIX 2 B HLA class II DR-beta (HLA-DR B) 9606
34 5KSV 2 B MHC class II HLA-DQ-beta-1 UNP residues 1-198 9606
35 6DIG 2 B HLA class II histocompatibility antigen, DQ beta 1 chain 9606
36 4MD0 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
37 4I5B 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
38 4AEN 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DRB1-1 BETA CHAIN EXTRACELLULAR DOMAIN, RESIDUES 30-227 9606
39 1D5Z 2 B PROTEIN (HLA CLASS II HISTOCOMPATIBILITY ANTIGEN) DR-4 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
40 3L6F 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-221 9606
41 1PYW 2 B HLA class II histocompatibility antigen, DR-1 beta chain Extracellular domain of HLA-DRB1 9606
42 1D5M 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN DR-4 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
43 4MCY 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
44 2NNA 2 B MHC class II antigen residues in database 33-224 9606
45 5V4M 2 C, F, I, L alpha3(135-145)-HLA-DRB1*15:01 9606
46 4MAY 2 B MHC class II antigen unp residues 31-230 9606
47 4OV5 2 B, E, H, K, N, Q HLA class II histocompatibility antigen, DRB1-1 beta chain Secreted extracellular domain (UNP residues 30-219) 9606
48 6BIR 2 B MHC class II antigen 9606
49 3QXD 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-219 9606
50 1D9K 4 D, H MHC I-AK B CHAIN (BETA CHAIN) 10090
51 3S5L 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain MHC class II b chain 9606
52 6BGA 2 B 2B4 peptide,MHC I-Ek B chain 10090
53 4Y19 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain UNP residues 30-219 9606
54 1JWU 2 B HLA class II histocompatibility antigen, DR-1 beta chain 9606
55 4H25 2 B, E MHC class II antigen 9606
56 1IEA 2 B, D MHC CLASS II I-EK WITH COVALENTLY BOUND HB PEPTIDE 10090
57 2Q6W 2 B, E HLA class II histocompatibility antigen, DRB3-1 beta chain sequence database residues 30-219 9606
58 2PXY 4 D H-2 class II histocompatibility antigen, A-U beta chain extracellular beta-1, extracellular beta-2 10090
59 4AH2 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN GAMMA CHAIN, HLA CLASS II HISTOCOMPATIBILITY ANTIGEN\,DRB1-1 BETA CHAIN EXTRACELLULAR DOMAIN, RESIDUES 106-120,30-227 9606
60 1S9V 2 B, E HLA class II histocompatibility antigen, DQ(1) beta chain residues 1-198 9606
61 6BIL 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
62 1SJH 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain Extracellular domain of HLA-DRB*0101 9606
63 4MCZ 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
64 3WEX 2 B, D, F, H MHC class II antigen extracellular domain, UNP residues 1-184 9606
65 1SJE 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain Extracelluar domain of HLA-DRB*0101 9606
66 6CPO 2 B, E HLA-DRB1 protein 9606
67 1KLG 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN residues 30-219 9606
68 2XN9 5 E MAJOR HISTOCOMPATIBILITY COMPLEX CLASS II BETA CHAIN CHAIN DRB1 0101 EXTRACELLULAR DOMAIN, RESIDUES 30-219 9606
69 1D6E 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN DR-4 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
70 2IPK 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain Extracellular domain, residues 30-219 9606
71 1J8H 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-4 BETA CHAIN Extracellular Domain 9606
72 1K2D 2 B H-2 class II histocompatibility antigen, A-U beta chain EXTRACELLULAR BETA-1 AND BETA-2 DOMAINS 10090
73 6CQN 2 B HLA class II histocompatibility antigen, DRB1-11 beta chain 9606
74 6BIN 3 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
75 1KTD 2 B, D Fusion protein consisting of cytochrome C peptide, glycine rich linker, and MHC E-beta-k Fusion protein consists of pigeon cytochrome C peptide, residues 1-14 (AADLIAYLKQASAK), Glycine rich linker, residues 15-30 (GGGGSLVGGGSGGGGS) and mouse MHC E-beta-k chain 10090
76 6CQL 2 B HLA class II histocompatibility antigen, DRB1-11 beta chain 9606
77 1JK8 2 B MHC class II HLA-DQ8 beta chain (DQB1*0302) 9606
78 4P2O 2 B MHC class II E-beta-k 10090
79 1AQD 2 B, E, H, K HLA-DR1 CLASS II HISTOCOMPATIBILITY PROTEIN SECRETED EXTRACELLULAR DOMAINS 9606
80 5KS9 2 B, D HLA class II histocompatibility antigen, DQ beta 1 chain 9606
81 1T5X 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain Extracellular domain 9606
82 4Z7U 2 B, D MHC class II HLA-DQ-beta-1 UNP residues 1-192 9606
83 5LAX 2 B, D HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular domain, UNP residues 26-206. ADLVPR ARE A PART OF EXPRESSION TAG 9606
84 1JWS 2 B HLA class II histocompatibility antigen, DR-1 beta chain 9606
85 4FQX 5 B HLA class II histocompatibility antigen, DRB1-1 beta chain unp residues 30-221 9606
86 4Z7V 2 B, D MHC class II HLA-DQ-beta-1 UNP residues 1-192 9606
87 1I3R 2 B, D, F, H FUSION PROTEIN CONSISTING OF MHC E-BETA-K PRECURSOR, GLYCINE RICH LINKER, AND HEMOGLOBIN BETA-2 CHAIN 10090
88 1T5W 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain Extracellular domain 9606
89 1R5V 3 B, D MHC H2-IE-beta 10090
90 4OZF 2 B HLA class II histocompatibility antigen, DQ beta 1 chain 9606
91 4E41 2 B, G HLA class II histocompatibility antigen, DRB1-1 beta chain unp residues 30-219 9606
92 6CPL 2 B HLA class II histocompatibility antigen, DRB1-11 beta chain 9606
93 1HXY 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN 9606
94 1U3H 4 D, H H-2 class II histocompatibility antigen, A-U beta chain extracellular beta-1, extracellular beta-2 10090
95 1JWM 2 B HLA class II histocompatibility antigen, DR-1 beta chain 9606
96 3PGC 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-227 9606
97 4H26 2 B, E MHC class II antigen 9606
98 4P57 2 B, D mim2 peptide,HLA class II histocompatibility antigen, DP beta 1 chain UNP residues 32-218 9606
99 6MFF 2 C MHC class II HLA-DQ-beta-1 - DQ2-glia-omega1 chimeric protein 9606
100 3QXA 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-219 9606
101 5KSU 2 B, E MHC class II HLA-DQ-beta-1 UNP residues 1-198 9606
102 2ICW 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain residues 30-219 9606
103 1D5X 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN DR-4 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
104 2SEB 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN EXTRACELLULAR DOMAIN 9606
105 3PGD 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-227 9606
106 6ATZ 2 B, D MHC class II antigen UNP residues 32-219 9606
107 3S4S 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-221 9606
108 6CQJ 2 B, E, H HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
109 1FYT 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN EXTRACELLULAR DOMAIN 9606
110 4P5K 2 B, E RAS peptide,HLA class II histocompatibility antigen, DP beta 1 chain UNP residues 32-218 9606
111 3PL6 2 B MHC class II HLA-DQ-beta chain UNP residues 31-232 9606
112 1KG0 2 B MHC class II Receptor HLA-DR1 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
113 3QIU 2 B MHC CLASS II H2-IA-BETA CHAIN 10090
114 1DLH 2 B, E CLASS II HISTOCOMPATIBILITY ANTIGEN (HLA-DR1) (BETA CHAIN) 9606
115 4P4K 2 B, F mim2 peptide,HLA class II histocompatibility antigen, DP beta 1 chain UNP residues 32-218 9606
116 3QIB 2 B MHC class II E-beta-k unp residues 29-224 10090
117 1IEB 2 B, D MHC CLASS II I-EK WITH COVALENTLY BOUND HSP70 PEPTIDE 10090
118 6CQQ 2 B, G HLA-DRB1 protein 9606
119 2IAM 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain residues 1-190 (30-219) 9606
120 1R5I 2 B, F HLA class II histocompatibility antigen, DRB1-1 beta chain beta chain of class II MHC (residues 30-219) 9606
121 1BX2 2 B, E PROTEIN (HLA-DR2) EXTRACELLULAR DOMAINS BETA 1, BETA 2 9606
122 4GRL 2 B MHC class II antigen 9606
123 6BIV 2 A HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
124 1KT2 2 B, D Fusion protein consisting of cytochrome C peptide, glycine rich linker, and MHC E-beta-k Fusion protein consists of moth cytochrome C peptide, residues 1-14 (ADLIAYLKQATK), Glycine rich linker, residues 15-30 (GGGGSLVPRGSGGGGS) and mouse MHC E-beta-k chain 304329
125 2Z31 4 D H-2 class II histocompatibility antigen, A-U beta chain precursor extracellular beta-1 and extracellular beta-2 10090
126 4IS6 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain UNP residues 30-221 9606
127 4P4R 2 B, D mim2 peptide,HLA class II histocompatibility antigen, DP beta 1 chain UNP residues 32-218 9606
128 4GBX 4 B HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
129 2IAN 2 B, G, L, Q HLA class II histocompatibility antigen, DRB1-1 beta chain residues 1-190 (30-219) 9606
130 4OZH 2 B, D HLA class II histocompatibility antigen, DQ beta 1 chain 9606
131 4OZG 2 B, D HLA class II histocompatibility antigen, DQ beta 1 chain 9606
132 5KSB 2 B, D HLA class II histocompatibility antigen, DQ beta 1 chain 9606
133 2OJE 2 B, F HLA class II histocompatibility antigen, DRB1-1 beta chain precursor extracellular domain, residues 30-219 9606
134 4I0P 4 D, H HLA class II histocompatibility antigen, DO beta chain 9606
135 3O6F 2 B, F HLA class II histocompatibility antigen, DRB1-4 beta chain unp residues 30-220 9606
136 1A6A 2 B HLA class II histocompatibility antigen, DR-1 beta chain 9606
137 4Z7W 2 B, D MHC class II HLA-DQ-beta-1 UNP residues 1-192 9606
138 1SEB 2 B, F HLA CLASS II HISTOCOMPATIBILITY ANTIGEN EXTRACELLULAR DOMAIN 9606
139 4P2Q 2 B, G, L, Q MHC class II E-beta-k 10090
140 4C56 5 E, K MHC CLASS II ANTIGEN IMMUNOGLOBULIN DOMAIN 9606
141 6CQR 2 B, G HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
142 2FSE 2 B, D HLA class II histocompatibility antigen, DRB1-1 beta chain chains B and D form a chimera with chains A and C, respectively 10090
143 4OZI 2 B, D HLA class II histocompatibility antigen, DQ beta 1 chain 9606
144 4X5X 2 B, D HLA class II histocompatibility antigen, DRB1-1 beta chain extracellular, UNP residues 30-227 9606
145 4P2R 2 B, G, L, Q MHC class II E-beta-k 10090
146 3LQZ 2 B HLA-DP2 beta chain linked with DRa peptide 9606
147 1HQR 2 B HLA-DR BETA CHAIN 9606
148 3QIW 2 B MHC CLASS II H2-IA-BETA CHAIN unp residues 29-224 10090
149 2WBJ 2 B, F HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DRB1-15 BETA CHAIN MHC CLASS II, RESIDUES 29-227 9606
150 5V4N 2 C, F alpha3(135-145)-HLA-DRB1*01:01 9606
151 1ZGL 2 B, E, H, K major histocompatibility complex, class II, DR beta 5 9606
152 1LO5 2 B HLA class II histocompatibility antigen, DR-1 beta chain extracellular domain 9606
153 1H15 2 B, E HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR BETA 1 CHAIN BETA CHAIN, RESIDUES 30-219 9606
154 4GG6 2 B, D HLA class II histocompatibility antigen, DQ beta 1 chain EXTRACELLULAR DOMAINS, UNP RESIDUES 33-224 9606
155 1R5W 2 B, D MHC H2-IE-beta 10090
156 4H1L 2 B, E MHC class II antigen 9606
157 4Y1A 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain UNP residues 30-219 9606
158 1YMM 2 B HLA class II histocompatibility antigen, DR beta chain 9606
159 3T0E 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain unp residues 30-221 9606
160 1JL4 2 B H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A-K BETA CHAIN 10090
161 6U3N 4 B MHC class II HLA-DQ-beta-1 9606
162 6U3O 4 D, F MHC class II HLA-DQ-beta-1 9606