Sequence Similarity Clusters for the Entities in PDB 1HQR

Entity #1 | Chains: A
HLA-DR ALPHA CHAIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 81 90 285
95 % 92 101 306 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 92 101 320
70 % 107 118 304
50 % 169 190 179
40 % 169 190 191
30 % 169 190 201
Entity #2 | Chains: B
HLA-DR BETA CHAIN protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 9385
95 % 2 4 9555 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 89 96 350
70 % 103 112 316
50 % 147 162 204
40 % 147 162 219
30 % 147 162 231
Entity #3 | Chains: C
MYELIN BASIC PROTEIN protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
STREPTOCOCCAL PYROGENIC EXOTOXIN C protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15627
95 % 2 3 16452 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.8
PDBFlex
90 % 2 3 13994
70 % 2 3 15178
50 % 2 3 13706
40 % 4 5 6794
30 % 84 90 446

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4X5W 1 A HLA class II histocompatibility antigen, DR alpha chain extracellular, UNP residues 26-217 9606
2 4MD5 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular Domain, UNP residues 26-206 9606
3 4MDJ 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular Domain, UNP residues 26-206 9606
4 6ATF 1 A, D HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-206 9606
5 3C5J 1 A HLA class II histocompatibility antigen, DR alpha chain UNP residues 25-206 9606
6 4MD4 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular Domain, UNP residues 26-206 9606
7 4MDI 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular Domain, UNP residues 26-206 9606
8 3PDO 1 A HLA class II histocompatibility antigen, DR alpha chain extracellular domain 9606
9 6HBY 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
10 6HBY 4 D HLA class II histocompatibility antigen, DR alpha chain 9606
11 6ATI 1 A, D HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-206 9606
12 1KLU 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN residues 29-207 9606
13 6BIY 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
14 6NIX 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
15 1FV1 1 A, D MAJOR HISTOCOMPATIBILITY COMPLEX ALPHA CHAIN 9606
16 6BIJ 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
17 6CPN 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
18 6BIZ 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
19 2G9H 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
20 6BIX 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
21 4MD0 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular Domain, UNP residues 26-206 9606
22 4AEN 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN EXTRACELLULAR DOMAIN, RESIDUES 26-217 9606
23 1D5Z 1 A PROTEIN (HLA CLASS II HISTOCOMPATIBILITY ANTIGEN) DR ALPHA CHAIN, EXTRACELLULAR DOMAIN 9606
24 1PYW 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular domain of HLA-DRA 9606
25 1D5M 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN DR ALPHA CHAIN, EXTRACELLULAR DOMAIN 9606
26 4MCY 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular Domain, UNP residues 26-206 9606
27 5V4M 1 A, D, G, J HLA-DRA1 9606
28 4OV5 1 A, D, G, J, M, P HLA class II histocompatibility antigen, DR alpha chain Secreted extracellular domain (UNP residues 26-207) 9606
29 6BIR 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
30 4Y19 1 A HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-206 9606
31 1JWU 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
32 4H25 1 A, D HLA class II histocompatibility antigen, DR alpha chain 9606
33 2Q6W 1 A, D HLA class II histocompatibility antigen, DR alpha chain sequence database residues 26-207 9606
34 4AH2 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN EXTRACELLULAR DOMAIN, RESIDUES 26-217 9606
35 6BIL 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
36 1SJH 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular domain of HLA-DRA*0101 9606
37 4MCZ 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular Domain, UNP residues 26-206 9606
38 1SJE 1 A HLA class II histocompatibility antigen, DR alpha chain Extracelluar domain of HLA-DRA*0101 9606
39 6CPO 1 A, D HLA class II histocompatibility antigen, DR alpha chain 9606
40 1KLG 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN residues 29-205 9606
41 2XN9 4 D HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN, CHAIN DR 0101 EXTRACELLULAR DOMAIN, RESIDUES 26-207 9606
42 1D6E 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN DR ALPHA CHAIN, EXTRACELLULAR DOMAIN 9606
43 2IPK 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular domain, residues 26-207 9606
44 1J8H 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN Extracellular Domain 9606
45 6CQN 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
46 6BIN 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
47 6CQL 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
48 1AQD 1 A, D, G, J HLA-DR1 CLASS II HISTOCOMPATIBILITY PROTEIN SECRETED EXTRACELLULAR DOMAINS 9606
49 1T5X 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular domain 9606
50 1JWS 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
51 1T5W 1 A, D HLA class II histocompatibility antigen, DR alpha chain Extracellular domain 9606
52 4E41 1 A, F HLA class II histocompatibility antigen, DR alpha chain unp residues 26-207 9606
53 1HXY 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN 9606
54 1JWM 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
55 3PGC 1 A, D HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-217 9606
56 4H26 1 A, D HLA class II histocompatibility antigen, DR alpha chain 9606
57 3QXA 1 A, D HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-207 9606
58 2ICW 1 A, D HLA class II histocompatibility antigen, DR alpha chain residues 28-206 9606
59 1D5X 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN DR ALPHA CHAIN, EXTRACELLULAR DOMAIN 9606
60 2SEB 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN EXTRACELLULAR DOMAIN 9606
61 3PGD 1 A, D HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-217 9606
62 6ATZ 1 A, C HLA class II histocompatibility antigen, DR alpha chain UNP residues 29-205 9606
63 6CQJ 1 A, D, G HLA class II histocompatibility antigen, DR alpha chain 9606
64 1FYT 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN EXTRACELLULAR DOMAIN 9606
65 1KG0 1 A MHC class II Receptor HLA-DR1 ALPHA CHAIN, EXTRACELLULAR DOMAIN 9606
66 1DLH 1 A, D CLASS II HISTOCOMPATIBILITY ANTIGEN (HLA-DR1) (ALPHA CHAIN) 9606
67 6CQQ 1 A, F HLA class II histocompatibility antigen, DR alpha chain 9606
68 2IAM 1 A HLA class II histocompatibility antigen, DR alpha chain residues 1-182 (26-207) 9606
69 1R5I 1 A, E HLA class II histocompatibility antigen, DR alpha chain alpha chain of class II MHC (residues 26-206) 9606
70 1BX2 1 A, D PROTEIN (HLA-DR2) EXTRACELLULAR DOMAINS ALPHA 1, ALPHA 2 9606
71 6BIV 1 B HLA class II histocompatibility antigen, DR alpha chain 9606
72 4IS6 1 A HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-207 9606
73 2IAN 1 A, F, K, P HLA class II histocompatibility antigen, DR alpha chain residues 1-182 (26-207) 9606
74 2OJE 1 A, E HLA class II histocompatibility antigen, DR alpha chain precursor extracellular domain, residues 27-206 9606
75 3O6F 1 A, E HLA class II histocompatibility antigen, DR alpha chain unp residues 26-207 9606
76 1A6A 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
77 1SEB 1 A, E HLA CLASS II HISTOCOMPATIBILITY ANTIGEN EXTRACELLULAR DOMAIN 9606
78 4C56 4 D, J HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN IMMUNOGLOBULIN DOMAIN 9606
79 6CQR 1 A, F HLA class II histocompatibility antigen, DR alpha chain 9606
80 4X5X 1 A, C HLA class II histocompatibility antigen, DR alpha chain extracellular, UNP residues 26-217 9606
81 1HQR 1 A HLA-DR ALPHA CHAIN 9606
82 2WBJ 1 A, E HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN MHC CLASS II, RESIDUES 26-218 9606
83 5V4N 1 A, D HLA-DRA1 9606
84 1ZGL 1 A, D, G, J HLA class II histocompatibility antigen, DR alpha chain 9606
85 1LO5 1 A HLA class II histocompatibility antigen, DR alpha chain extracellular domain 9606
86 1H15 1 A, D HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN ALPHA CHAIN, RESIDUES 26-207 9606
87 4H1L 1 A, D HLA class II histocompatibility antigen, DR alpha chain 9606
88 4Y1A 1 A HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-206 9606
89 1YMM 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
90 3T0E 1 A HLA class II histocompatibility antigen, DR alpha chain unp residues 26-207 9606