Sequence Similarity Clusters for the Entities in PDB 1HQ4

Entity #1 | Chains: A,C
ANTIBODY HA5-19A4 FAB LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 35240
95 % 2 2 28875 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 59 150 159
70 % 1594 2442 2
50 % 4037 6290 1
40 % 4037 6290 1
30 % 4065 6336 1
Entity #2 | Chains: B,D
ANTIBODY HA5-19A4 FAB HEAVY CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50300
95 % 2 2 26754 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 6 6 10255
70 % 1930 3009 1
50 % 4038 6290 1
40 % 4038 6290 1
30 % 4066 6336 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures