Sequence Similarity Clusters for the Entities in PDB 1HMS

Entity #1 | Chains: A
MUSCLE FATTY ACID BINDING PROTEIN protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 15 2705
95 % 11 18 2768 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 11 18 2855
70 % 22 71 753
50 % 28 120 368
40 % 32 199 201
30 % 44 330 104

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures