Sequence Similarity Clusters for the Entities in PDB 1HHO

Entity #1 | Chains: A
HEMOGLOBIN A (OXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 177 258 12
95 % 186 269 17 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.8
PDBFlex
90 % 186 269 19
70 % 213 337 18
50 % 503 765 4
40 % 508 770 7
30 % 981 1323 6
Entity #2 | Chains: B
HEMOGLOBIN A (OXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 155 218 43
95 % 183 254 25 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 186 259 20
70 % 230 352 15
50 % 504 765 4
40 % 509 770 7
30 % 982 1323 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures