Sequence Similarity Clusters for the Entities in PDB 1HHO

Entity #1 | Chains: A
HEMOGLOBIN A (OXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 177 259 23
95 % 186 270 30 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.8
PDBFlex
90 % 186 270 32
70 % 213 338 19
50 % 503 767 5
40 % 508 772 8
30 % 984 1328 7
Entity #2 | Chains: B
HEMOGLOBIN A (OXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 155 219 45
95 % 183 255 32 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 186 260 34
70 % 230 353 15
50 % 504 767 5
40 % 509 772 8
30 % 985 1328 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures