Sequence Similarity Clusters for the Entities in PDB 1HCN

Entity #1 | Chains: A
HUMAN CHORIONIC GONADOTROPIN protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 9975
95 % 1 10 4312 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.3
PDBFlex
90 % 1 10 4340
70 % 1 10 4264
50 % 1 10 4101
40 % 1 10 3921
30 % 1 10 3634
Entity #2 | Chains: B
HUMAN CHORIONIC GONADOTROPIN protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 29239
95 % 1 3 24261 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.7
PDBFlex
90 % 1 3 23454
70 % 1 3 21358
50 % 1 3 18484
40 % 1 3 16464
30 % 1 3 14084

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures