Sequence Similarity Clusters for the Entities in PDB 1HCF

Entity #1 | Chains: A,B
NEUROTROPHIN-4 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 18338
95 % 2 3 17872 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.4
PDBFlex
90 % 2 3 17598
70 % 2 3 16347
50 % 18 24 1588
40 % 18 24 1639
30 % 18 24 1670
Entity #2 | Chains: X,Y
BDNF/NT-3 GROWTH FACTORS RECEPTOR protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51102
95 % 2 2 27116 Flexibility: High
Max RMSD: 15.7, Avg RMSD: 10.6
PDBFlex
90 % 2 2 26194
70 % 2 2 23809
50 % 2 2 20934
40 % 4 5 9752
30 % 4 5 9017

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures