Sequence Similarity Clusters for the Entities in PDB 1H2U

Entity #1 | Chains: A,B
80 KDA NUCLEAR CAP BINDING PROTEIN protein, length: 723 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 31499
95 % 6 11 3067 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 6 11 3304
70 % 6 11 3320
50 % 6 11 3290
40 % 6 11 3268
30 % 6 11 3218
Entity #2 | Chains: X,Y
20 KDA NUCLEAR CAP BINDING PROTEIN protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 9 3065
95 % 5 9 3803 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 0.6
PDBFlex
90 % 5 9 3869
70 % 5 9 3860
50 % 5 9 3785
40 % 5 9 3775
30 % 5 9 3689

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures