Sequence Similarity Clusters for the Entities in PDB 1GZP

Entity #1 | Chains: A
T-CELL SURFACE GLYCOPROTEIN CD1B protein, length: 300 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 5527
95 % 11 13 5936 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.0
PDBFlex
90 % 11 13 6277
70 % 12 14 4507
50 % 105 138 372
40 % 105 138 393
30 % 107 140 396
Entity #2 | Chains: B
B2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 657 744 2
95 % 702 793 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 718 811 4
70 % 968 1115 4
50 % 984 1139 3
40 % 984 1139 4
30 % 984 1139 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures