Sequence Similarity Clusters for the Entities in PDB 1GXD

Entity #1 | Chains: A,B
72 KDA TYPE IV COLLAGENASE protein, length: 631 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 34328
95 % 2 2 26744 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 2.4
PDBFlex
90 % 2 2 25811
70 % 2 2 23529
50 % 2 2 20704
40 % 2 2 18949
30 % 2 2 17019
Entity #2 | Chains: C,D
METALLOPROTEINASE INHIBITOR 2 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 18472
95 % 3 3 17645 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.5
PDBFlex
90 % 6 6 10910
70 % 6 6 10465
50 % 6 6 9705
40 % 10 10 5749
30 % 10 10 5491

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures