Sequence Similarity Clusters for the Entities in PDB 1GJ4

Entity #1 | Chains: L
THROMBIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 141 336 54
95 % 143 344 70 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 143 344 76
70 % 143 344 89
50 % 143 344 122
40 % 143 344 141
30 % 143 344 152
Entity #2 | Chains: H
THROMBIN protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 138 334 55
95 % 150 380 58 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 150 387 60
70 % 150 411 56
50 % 150 411 95
40 % 958 1900 4
30 % 963 1914 7
Entity #3 | Chains: I
ACETYL HIRUDIN protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures