Sequence Similarity Clusters for the Entities in PDB 1GGD

Entity #1 | Chains: A
GAMMA CHYMOTRYPSIN protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
GAMMA CHYMOTRYPSIN protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 39 972
95 % 3 39 1332 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 3 39 1381
70 % 3 41 1342
50 % 3 41 1371
40 % 3 47 1269
30 % 3 47 1308
Entity #3 | Chains: C
GAMMA CHYMOTRYPSIN protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 39 971
95 % 3 39 1335 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.4
PDBFlex
90 % 3 39 1358
70 % 3 41 1322
50 % 3 41 1361
40 % 3 48 1235
30 % 3 57 1113

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures