Sequence Similarity Clusters for the Entities in PDB 1GBK

Entity #1 | Chains: A
ALPHA-LYTIC PROTEASE protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 13256
95 % 25 48 1156 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 25 48 1194
70 % 26 50 1051
50 % 27 51 1057
40 % 27 51 1092
30 % 27 51 1135
Entity #2 | Chains: P
METHOXYSUCCINYL-ALA-ALA-PRO-ALANINE BORONIC ACID INHIBITOR protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2H5C 1 A ALPHA-LYTIC PROTEASE MATURE PROTEASE DOMAIN (RESIDUES 200-397) 69 3.4.21.12 | Details
2 1SSX 1 A Alpha-lytic protease Mature protease domain (residues 200-397) 69 3.4.21.12 | Details
3 2H5D 1 A ALPHA-LYTIC PROTEASE glycerol bound to the catalytic adduct, creating a mimic of the acylation transition state intermediate MATURE PROTEASE DOMAIN (RESIDUES 200-397) 69 3.4.21.12 | Details
4 3M7U 1 A Alpha-lytic protease MATURE PROTEASE DOMAIN (RESIDUES 1-198) 69 3.4.21.12 | Details
5 3URD 1 A Alpha-lytic protease UNP residues 200-397 69 3.4.21.12 | Details
6 3URC 1 A Alpha-lytic protease 69 3.4.21.12 | Details
7 1QQ4 1 A ALPHA-LYTIC PROTEASE RESIDUES 1-198 69 3.4.21.12 | Details
8 1QRW 1 A ALHPA-LYTIC PROTEASE MATURE PROTEASE DOMAIN, RESIDUES 1-198 69 3.4.21.12 | Details
9 3QGJ 1 A, C Alpha-lytic protease residues 200-397 69 3.4.21.12 | Details
10 5MRR 1 A, B, C, D Lytic endopeptidase preproenzyme 186334
11 3URE 1 A, B Alpha-lytic protease 69 3.4.21.12 | Details
12 3M7T 1 A Alpha-lytic protease MATURE PROTEASE DOMAIN (RESIDUES 1-198) 69 3.4.21.12 | Details
13 2ULL 1 A ALPHA-LYTIC PROTEASE THE ELECTRON DENSITY WAS MODELED WITH 16 CONFORMATIONS OF THE ENTIRE PROTEIN 69 3.4.21.12 | Details
14 1TAL 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
15 1QRX 1 A ALPHA-LYTIC PROTEASE MATURE PROTEASE DOMAIN, RESIDUES 1-198 69 3.4.21.12 | Details
16 2ALP 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
17 5MRT 1 A, B Lytic endopeptidase preproenzyme 186334
18 1P12 1 E ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
19 1P11 1 E ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
20 1P01 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
21 1GBJ 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
22 1P02 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
23 7LPR 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
24 3PRO 1 A, B ALPHA-LYTIC PROTEASE MATURE PROTEASE 69 3.4.21.12 | Details
25 6LPR 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
26 1P05 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
27 1GBK 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
28 5LPR 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
29 1GBA 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
30 3LPR 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
31 9LPR 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
32 1GBF 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
33 5MRS 1 A, B, C, D Lytic endopeptidase preproenzyme 186334
34 1GBB 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
35 1P03 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
36 1GBL 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
37 1P09 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
38 2LPR 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
39 1BOQ 1 A PROTEIN (ALPHA-LYTIC PROTEASE) 69 3.4.21.12 | Details
40 1GBC 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
41 8LPR 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
42 1GBD 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
43 1GBH 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
44 1P10 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
45 1GBI 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
46 1GBE 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
47 1GBM 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
48 1P06 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
49 1P04 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
50 4PRO 1 A, B ALPHA-LYTIC PROTEASE CHAIN A, B, MATURE PROTEASE. CHAIN C, D, PRO REGION 69 3.4.21.12 | Details
51 5WOT 1 A Alpha-lytic protease residues 200-397 69 3.4.21.12 | Details