Sequence Similarity Clusters for the Entities in PDB 1GBK

Entity #1 | Chains: A
ALPHA-LYTIC PROTEASE protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 15248
95 % 25 48 1151 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 25 48 1192
70 % 26 50 1056
50 % 27 51 1051
40 % 27 51 1090
30 % 27 51 1134
Entity #2 | Chains: P
METHOXYSUCCINYL-ALA-ALA-PRO-ALANINE BORONIC ACID INHIBITOR protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures