Sequence Similarity Clusters for the Entities in PDB 1GAF

Entity #1 | Chains: L
CHIMERIC 48G7 FAB protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 38972
95 % 4 7 12677 Flexibility: Low
Max RMSD: 6.1, Avg RMSD: 2.9
PDBFlex
90 % 6 10 8841
70 % 700 2399 2
50 % 887 3045 2
40 % 887 3045 2
30 % 1822 6183 1
Entity #2 | Chains: H
CHIMERIC 48G7 FAB protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 37725
95 % 1 4 20079 Flexibility: Medium
Max RMSD: 7.2, Avg RMSD: 4.0
PDBFlex
90 % 1 5 13830
70 % 865 2943 1
50 % 922 3094 1
40 % 922 3094 1
30 % 1823 6183 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures