Sequence Similarity Clusters for the Entities in PDB 1G1X

Entity #1 | Chains: D,I
16S RIBOSOMAL RNA rna, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E,J
16S RIBOSOMAL RNA rna, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,F
30S RIBOSOMAL PROTEIN S6 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 101 339 25
95 % 109 347 39 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.8
PDBFlex
90 % 109 347 44
70 % 109 347 55
50 % 109 347 90
40 % 109 347 104
30 % 109 347 105
Entity #4 | Chains: B,G
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 30604
95 % 103 342 42 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 103 342 47
70 % 103 342 57
50 % 126 554 25
40 % 126 554 32
30 % 126 554 36
Entity #5 | Chains: C,H
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 54 866
95 % 90 278 72 Flexibility: Low
Max RMSD: 8.5, Avg RMSD: 0.9
PDBFlex
90 % 90 278 77
70 % 90 278 89
50 % 90 278 112
40 % 90 278 130
30 % 90 278 141

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures