Sequence Similarity Clusters for the Entities in PDB 1FNE

Entity #1 | Chains: A,C
PROTEIN (MHC CLASS II I-EK, ALPHA CHAIN) protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 5310
95 % 2 16 1962 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 2 17 1873
70 % 15 115 261
50 % 24 178 170
40 % 24 178 184
30 % 24 178 193
Entity #2 | Chains: B,D
PROTEIN (MHC CLASS II I-EK, BETA CHAIN) protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 4213
95 % 2 11 2740 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 2 16 1981
70 % 15 110 288
50 % 22 157 192
40 % 22 157 208
30 % 22 157 219

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures