Sequence Similarity Clusters for the Entities in PDB 1F4Y

Entity #1 | Chains: L
ANTIBODY S-20-4, FAB FRAGMENT, LIGHT CHAIN protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 65092
95 % 26 46 454 Flexibility: Low
Max RMSD: 8.9, Avg RMSD: 2.4
PDBFlex
90 % 31 52 433
70 % 388 613 7
50 % 2108 3067 2
40 % 2108 3067 2
30 % 4284 6228 1
Entity #2 | Chains: H
ANTIBODY S-20-4, FAB FRAGMENT, HEAVY CHAIN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 35000
95 % 3 3 28005 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 25 31 1619
70 % 2037 2965 1
50 % 2147 3117 1
40 % 2147 3117 1
30 % 4285 6228 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1F4X 2 H ANTIBODY S-20-4, FAB FRAGMENT, HEAVY CHAIN 10090
2 1F4W 2 H ANTIBODY S-20-4, FAB FRAGMENT, HEAVY CHAIN 10090
3 1F4Y 2 H ANTIBODY S-20-4, FAB FRAGMENT, HEAVY CHAIN 10090