Sequence Similarity Clusters for the Entities in PDB 1F4Y

Entity #1 | Chains: L
ANTIBODY S-20-4, FAB FRAGMENT, LIGHT CHAIN protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 64900
95 % 26 46 459 Flexibility: Low
Max RMSD: 8.9, Avg RMSD: 2.4
PDBFlex
90 % 31 52 433
70 % 388 615 8
50 % 2110 3071 2
40 % 2110 3071 2
30 % 4288 6236 1
Entity #2 | Chains: H
ANTIBODY S-20-4, FAB FRAGMENT, HEAVY CHAIN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 34628
95 % 3 3 27351 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 25 31 1620
70 % 2039 2969 1
50 % 2149 3121 1
40 % 2149 3121 1
30 % 4289 6236 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6GXX 1 H FAB 1D9 heavy chain 10090
2 5MHE 2 H Fab-fragment 10090
3 5DQD 2 H S55-5 Fab (IgG1) heavy chain 10090
4 6A9K 2 B, H IMMUNOGLOBULIN 9C10 H CHAIN 10090
5 6I1O 1 H FAB 2H2 heavy chain 10090
6 3O6K 2 H 11H6H1 Fab' heavy chain 10090
7 6IGU 2 H IMMUNOGLOBULIN 9C10 H CHAIN 10090
8 3O6L 2 H 11H6H1 Fab' heavy chain 10090
9 5T6P 2 B, D Fab Fragment - Heavy Chain MUC1 peptide APDTRPAP 10090
10 3FFD 1 A Monoclonal antibody, heavy chain, Fab fragment 10090
11 5T78 2 B, D Fab Fragment - AR20.5 - Heavy chain MUC1 peptide APDTRPAP 10090
12 1F4X 2 H ANTIBODY S-20-4, FAB FRAGMENT, HEAVY CHAIN 10090
13 1F4W 2 H ANTIBODY S-20-4, FAB FRAGMENT, HEAVY CHAIN 10090
14 4AEI 2 H, I, J FAB ANTIBODY HEAVY CHAIN VARIABLE DOMAIN 10090
15 2H1P 2 H 2H1 FAB 10090
16 2J4W 2 H FAB FRAGMENT OF MONOCLONAL ANTIBODY F8.12.19 MONOCLONAL ANTIBODY ISOTYPE IS IGG1, KAPPA 10090
17 3O6M 2 H 11H6H1 Fab' heavy chain 10090
18 2ADG 2 B Q425 Fab heavy chain 10090
19 5DQJ 2 A, H S55-5 Fab (IgG1) heavy chain 10090
20 5DO2 2 C, H 4C2 heavy chain 10090
21 6QIG 2 H Antibody Heavy Chain Antibody Heavy Chain 10116
22 2ADI 2 B Q425 Fab Heavy chain 10090
23 5MHG 2 H Fab-Fragment 10090
24 2ADJ 2 B Q425 Fab Heavy chain 10090
25 1F4Y 2 H ANTIBODY S-20-4, FAB FRAGMENT, HEAVY CHAIN 10090
26 2J5L 3 C FAB FRAGMENT OF MONOCLONAL ANTIBODY F8.12.19 MONOCLONAL ANTIBODY ISOTYPE IS IGG1, KAPPA. ANTIGEN-BINDING FRAGMENT FAB, HEAVY CHAIN 10090
27 5B4M 1 C, H Fab heavy chain 10090
28 4HZL 1 A, H Fab heavy chain 10090
29 6HX4 2 H, I Fab 1D9 heavy chain 10090
30 3VRL 1 E, H A10F9 Fab heavy chain 10090
31 6I3Z 3 H Fab 2H2 heavy chain 10090