Sequence Similarity Clusters for the Entities in PDB 1F4W

Entity #1 | Chains: L
ANTIBODY S-20-4, FAB FRAGMENT, LIGHT CHAIN protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 53168
95 % 13 46 453 Flexibility: Low
Max RMSD: 8.9, Avg RMSD: 2.4
PDBFlex
90 % 15 52 427
70 % 222 609 7
50 % 1132 3045 2
40 % 1132 3045 2
30 % 2314 6183 1
Entity #2 | Chains: H
ANTIBODY S-20-4, FAB FRAGMENT, HEAVY CHAIN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 31378
95 % 2 3 27414 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 13 31 1590
70 % 1099 2943 1
50 % 1167 3094 1
40 % 1167 3094 1
30 % 2315 6183 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures