Sequence Similarity Clusters for the Entities in PDB 1F2U

Entity #1 | Chains: A,C
RAD50 ABC-ATPASE protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 25474
95 % 2 3 22207 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.8
PDBFlex
90 % 2 3 21610
70 % 2 3 19840
50 % 2 3 17566
40 % 2 3 16184
30 % 2 3 14584
Entity #2 | Chains: B,D
RAD50 ABC-ATPASE protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 32090
95 % 2 3 20629 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 2.3
PDBFlex
90 % 2 3 22219
70 % 2 3 20382
50 % 2 3 18039
40 % 2 3 16566
30 % 2 3 14899

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures