Sequence Similarity Clusters for the Entities in PDB 1EMI

Entity #1 | Chains: B
16S RIBOSOMAL RNA rna, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
RIBOSOMAL PROTEIN S8 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 333 335 30
95 % 333 335 50 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 337 339 51
70 % 337 339 62
50 % 362 364 86
40 % 558 560 29
30 % 758 760 22

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures