Sequence Similarity Clusters for the Entities in PDB 1EJ7

Entity #1 | Chains: L
RUBISCO (LARGE SUBUNIT) protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61087
95 % 2 5 8393 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.4
PDBFlex
90 % 21 35 225
70 % 23 44 134
50 % 30 56 131
40 % 33 65 126
30 % 46 95 106
Entity #2 | Chains: S
RUBISCO (SMALL SUBUNIT) protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 8784
95 % 2 5 8828 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 5 8743
70 % 9 20 708
50 % 19 33 290
40 % 21 39 258
30 % 21 39 275

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures