Sequence Similarity Clusters for the Entities in PDB 1ED1

Entity #1 | Chains: A
GAG POLYPROTEIN protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 49059
95 % 1 2 37544 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 2 35907
70 % 1 5 14986
50 % 1 5 13521
40 % 1 5 13550
30 % 1 5 12326

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1ED1 1 A GAG POLYPROTEIN SIV MATRIX ANTIGEN 11723
2 1ECW 1 A GAG POLYPROTEIN SIV MATRIX ANTIGEN 11723