Sequence Similarity Clusters for the Entities in PDB 1E6J

Entity #1 | Chains: H
IMMUNOGLOBULIN protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 43139
95 % 2 2 33934 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 19 29 1008
70 % 1990 2784 1
50 % 2095 2927 1
40 % 2095 2927 1
30 % 4189 5855 1
Entity #2 | Chains: L
IMMUNOGLOBULIN protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 43140
95 % 5 5 16846 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 78 135 195
70 % 1659 2273 2
50 % 2065 2886 2
40 % 2065 2886 2
30 % 4190 5855 1
Entity #3 | Chains: P
CAPSID PROTEIN P24 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 17641
95 % 49 72 1 Flexibility: Low
Max RMSD: 11.7, Avg RMSD: 1.7
PDBFlex
90 % 49 73 1
70 % 49 73 3
50 % 49 73 3
40 % 49 73 3
30 % 49 73 3

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures