1E28

Nonstandard peptide binding of HLA-B*5101 complexed with HIV immunodominant epitope KM2(TAFTIPSI)


Sequence Similarity Clusters for the Entities in PDB 1E28

Entity #1 | Chains: A
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN HEAVY CHAIN protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62260
95 % 161 173 235
90 % 237 253 146
70 % 747 860 6
50 % 756 874 7
40 % 812 935 8
30 % 822 960 13
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN LIGHT CHAIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 659 764 2
95 % 702 813 2
90 % 722 835 3
70 % 959 1142 4
50 % 977 1168 3
40 % 977 1168 4
30 % 977 1168 10
Entity #3 | Chains: C
PEPTIDE protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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