Sequence Similarity Clusters for the Entities in PDB 1E1C

Entity #1 | Chains: A,C
METHYLMALONYL-COA MUTASE ALPHA CHAIN protein, length: 727 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54544
95 % 6 8 5494 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.1
PDBFlex
90 % 6 8 5535
70 % 8 10 4627
50 % 11 13 3559
40 % 11 13 3547
30 % 11 13 3468
Entity #2 | Chains: B,D
METHYLMALONYL-COA MUTASE BETA CHAIN protein, length: 637 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 4586
95 % 6 8 5365 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 6 8 5417
70 % 6 8 5357
50 % 6 8 5149
40 % 6 8 5020
30 % 8 10 4402

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures