Sequence Similarity Clusters for the Entities in PDB 1DK1

Entity #1 | Chains: B
RRNA FRAGMENT rna, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
30S RIBOSOMAL PROTEIN S15 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 46584
95 % 32 321 37 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 32 321 42
70 % 32 321 53
50 % 41 503 22
40 % 41 508 33
30 % 41 508 52

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures